HsaEX6047990 @ hg38
Exon Skipping
Gene
ENSG00000188107 | EYS
Description
eyes shut homolog (Drosophila) [Source:HGNC Symbol;Acc:HGNC:21555]
Coordinates
chr6:63787119-63788249:-
Coord C1 exon
chr6:63788105-63788249
Coord A exon
chr6:63787267-63787371
Coord C2 exon
chr6:63787119-63787169
Length
105 bp
Sequences
Splice sites
3' ss Seq
AAGTCCATCTAACTTTGAAGTTC
3' ss Score
2.11
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
GTAGATGATCATAAAAATAAATCCATTATCGCCCCAGGAAGACTGGTTGGTCTCAATGTCTTCAGTCAGTTTTATGTAGGTGGCTACAGTGAATACACTCCAGATCTCTTACCAAATGGAGCAGATTTTAAAAATGGTTTTCAAG
Seq A exon
TTCAAAAGGCAAGAGACAGACTGCAGTCAACCCATCCATACCACCAAGGGGTAGCCCACAGAGGCCAGAGCAAGCCAAGAGGATTAAGGACAACATTGTGCTTGG
Seq C2 exon
AAACATTAAGATTGCACACTCCTGGAAGTATGTCAACTGCCACAGTCTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188107-'108-134,'108-133,109-134
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.389 C2=0.000
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=FE(36.6=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATAAAAATAAATCCATTATCGCCCC
R:
AAAGACTGTGGCAGTTGACAT
Band lengths:
186-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains