HsaEX6047991 @ hg19
Exon Skipping
Gene
ENSG00000188107 | EYS
Description
eyes shut homolog (Drosophila) [Source:HGNC Symbol;Acc:21555]
Coordinates
chr6:64495896-64497264:-
Coord C1 exon
chr6:64497160-64497264
Coord A exon
chr6:64497012-64497062
Coord C2 exon
chr6:64495896-64496094
Length
51 bp
Sequences
Splice sites
3' ss Seq
GCTGGCCCTTTCTCTTACAGAAA
3' ss Score
11.33
5' ss Seq
TTAGTGAGT
5' ss Score
5.79
Exon sequences
Seq C1 exon
TTCAAAAGGCAAGAGACAGACTGCAGTCAACCCATCCATACCACCAAGGGGTAGCCCACAGAGGCCAGAGCAAGCCAAGAGGATTAAGGACAACATTGTGCTTGG
Seq A exon
AAACATTAAGATTGCACACTCCTGGAAGTATGTCAACTGCCACAGTCTTTA
Seq C2 exon
TCTCGCTGTGTCATCAAGGCTGGAGTACAGTGGTGCCATCTCAGCTCACTGCAACCTTCATCTCCAGGGCTCAATCAATCCTCCCACCTTAGCCTCTCATGTAGCTGAGCCACTAAACCCAGCTAACATATCCTTACAAAGCTGATTTATATTGTAGTAGAGTTATAAAATAAAGACATGCTTTAAATTGTAATAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188107-'51-52,'51-51,52-52=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.389 A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAGAGACAGACTGCAGTC
R:
GCTGAGATGGCACCACTGTAC
Band lengths:
143-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)