HsaEX6055368 @ hg19
Exon Skipping
Gene
ENSG00000182983 | ZNF662
Description
zinc finger protein 662 [Source:HGNC Symbol;Acc:31930]
Coordinates
chr3:42950285-42959133:+
Coord C1 exon
chr3:42950285-42950401
Coord A exon
chr3:42953509-42953561
Coord C2 exon
chr3:42955819-42959133
Length
53 bp
Sequences
Splice sites
3' ss Seq
AATTTGATTTCACCTCCTAGGGA
3' ss Score
7.04
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CAGCATTTCCATTTCCCAAACCGGCTCTGATTTCCCAGCTGGAGCGAGGGGAAACACCCTGGTGCTCGGTTCCTCGGGGAGCTCTGGATGGAGAGGCCCCAAGGGGCATCTCCTCAG
Seq A exon
GGATAGGTGAAGAAGAGGCCTTCATCTTTTCTATTTCTTCTTGACGTTTTAAA
Seq C2 exon
AGGGTGTGTTGAAGAGGAAGAAAGAAGATTTTATTCTGAAGGAGGAAATTATTGAGGAAGCACAGGACCTCATGGTCCTATCAAGTGGACCCCAGTGGTGTGGATCCCAGGAATTATGGTTTGGGAAAACCTGTGAAGAGAAAAGCAGGTTAGGGAGATGGCCTGGTTACCTCAATGGGGGACGTATGGAAAGTTCTACAAATGATATTATAGAAGTGATTGTCAAGGATGAGATGATCTCAGTAGAAGAGAGTTCAGGGAATACTGATGTCAATAACCTCCTTGGTATACATCACAAAATTCTAAATGAGCAAATATTCTATATATGTGAGGAATGCGGCAAGTGTTTTGATCAAAATGAGGACTTTGATCAACACCAGAAAACTCATAATGGAGAGAAGGTCTATGGATGTAAGGAATGTGGGAAGGCTTTCAGTTTTCGATCACATTGCATTGCACATCAGAGAATTCACAGTGGGGTGAAACCCTATGAATGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182983-'3-7,'3-5,4-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.110 A=0.000 C2=0.050
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.6),PF097235=Zn-ribbon_8=WD(100=12.8),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCTCTGGATGGAGAGG
R:
GGGGTCCACTTGATAGGACCA
Band lengths:
134-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)