HsaEX6057444 @ hg19
Exon Skipping
Gene
ENSG00000170017 | ALCAM
Description
activated leukocyte cell adhesion molecule [Source:HGNC Symbol;Acc:400]
Coordinates
chr3:105158182-105239011:+
Coord C1 exon
chr3:105158182-105158329
Coord A exon
chr3:105159656-105159709
Coord C2 exon
chr3:105238911-105239011
Length
54 bp
Sequences
Splice sites
3' ss Seq
CAAATTTCTTTTCTGTTTAGGCT
3' ss Score
7.98
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
AGTCATTATTTGAATGGTTTGTGCAATTGACATATGCCTCAGTTTTTGTTTTTGTTTTTTAACCAATAAGCATGGAAAAAAAAAACCTCCTATGTTAGTTTCTTATTTTTCATATATAGAAAGTCATATGGAATACTCCTGCTATATG
Seq A exon
GCTATCTCTGATCTTCTGCCCCAGGATATATTTTTCAGGCATTGAAGGACTGAT
Seq C2 exon
GCCTTGGATGGTATACTGTAAATTCAGCATATGGAGATACCATTATCATACCTTGCCGACTTGACGTACCTCAGAATCTCATGTTTGGCAAATGGAAATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170017-'1-3,'1-1,2-3=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0768612=V-set=FE(29.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACATATGCCTCAGTTTTTGTTT
R:
TGAATTTACAGTATACCATCCAAGGC
Band lengths:
147-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)