Special

HsaEX6059813 @ hg38

Exon Skipping

Gene
Description
5-hydroxytryptamine receptor 3C [Source:HGNC Symbol;Acc:HGNC:24003]
Coordinates
chr3:184056875-184059640:+
Coord C1 exon
chr3:184056875-184057044
Coord A exon
chr3:184058427-184058587
Coord C2 exon
chr3:184059436-184059640
Length
161 bp
Sequences
Splice sites
3' ss Seq
CTGACCGGCCTCCCTTCCAGTGG
3' ss Score
8.57
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
CATGGATGTGGATCAGACGCCTTCCGGTCTCACTGCCTATATCAGCAGTGAAGGTCGAATTAAGTATGATAAGCCAATGAGGGTGACCAGCATCTGTAACCTGGACATCTTCTACTTCCCTTTTGACCAACAGAACTGTACCTTCACCTTCAGTTCTTTCCTCTACACAG
Seq A exon
TGGACAGCATGCTGCTGGGCATGGACAAGGAGGTGTGGGAGATCACAGACACGTCTCGCAAAGTCATCCAAACCCAGGGGGAGTGGGAGCTCTTGGGCATCAACAAGGCCACCCCAAAGATGTCCATGGGCAACAACCTATATGACCAGATCATGTTTTAT
Seq C2 exon
GTGGCCATCAGGCGCAGGCCAAGCCTCTACATCATAAACCTGCTGGTGCCCAGTAGCTTTCTGGTTGCCATTGATGCCCTCAGCTTCTACCTGCCAGCAGAGAGCGAGAATCGTGCCCCATTCAAGATAACACTTCTGCTGGGCTACAACGTCTTCCTGCTCATGATGAATGACTTGCTCCCTGCCAGTGGCACCCCCCTCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178084_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0293118=Neur_chan_LBD=FE(27.8=100)
A:
PF0293118=Neur_chan_LBD=FE(25.9=100)
C2:
PF0293118=Neur_chan_LBD=PD(2.9=8.7),PF0293211=Neur_chan_memb=PU(47.0=79.7)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGGATCAGACGCCTTCC
R:
AGGTAGAAGCTGAGGGCATCA
Band lengths:
258-419
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains