HsaEX6061959 @ hg19
Exon Skipping
Gene
ENSG00000175787 | ZNF169
Description
zinc finger protein 169 [Source:HGNC Symbol;Acc:12957]
Coordinates
chr9:97041040-97055476:+
Coord C1 exon
chr9:97041040-97041127
Coord A exon
chr9:97054623-97054749
Coord C2 exon
chr9:97055256-97055476
Length
127 bp
Sequences
Splice sites
3' ss Seq
GGGATGTGTTTGTGTTACAGGCA
3' ss Score
7.93
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
ATTTGCCTCTGCAACTTGACTCTCCTCTAGGAAGAGTACTCCAGAGAGCAGGGATATGTCACCAGGACTCCTGACAACCAGGAAGGAG
Seq A exon
GCATTGATGGCCTTCCGGGATGTGGCTGTGGCCTTCACCCAGAAGGAGTGGAAGCTATTGAGTTCTGCTCAGAGGACCCTGTACAGGGAGGTGATGCTGGAGAACTACAGCCATCTGGTCTCCCTGG
Seq C2 exon
GAATTGCATTTTCCAAACCAAAACTCATCGAACAGCTGGAGCAAGGCGACGAACCTTGGAGAGAGGAGAACGAACATCTTCTGGACCTTTGTCCAGGTGAGTGGGAAGCCCTGGGCAAGCGAGGGTGCAGGGCAGTGAGGAGCTCAGCAGGTAAGGAAGGAGGGGCTATCTTTGAGGTGCTAGGAGGAAGTTCTTCTTCAGGCCTCCTAGGCCACTGGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175787-'1-4,'1-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.295 A=0.140 C2=0.208
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTGCAACTTGACTCTCC
R:
CCCTCCTTCCTTACCTGCTGA
Band lengths:
248-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)