HsaEX6063047 @ hg38
Exon Skipping
Gene
ENSG00000119487 | MAPKAP1
Description
mitogen-activated protein kinase associated protein 1 [Source:HGNC Symbol;Acc:HGNC:18752]
Coordinates
chr9:125585555-125650417:-
Coord C1 exon
chr9:125650364-125650417
Coord A exon
chr9:125599835-125599927
Coord C2 exon
chr9:125585555-125585727
Length
93 bp
Sequences
Splice sites
3' ss Seq
AGATTTACATTTGCGGACAGGCG
3' ss Score
3.31
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
AGCCCTAGGGTGAAGTAGATCGTGGTGAAAAGTGAAGCTCTGGGGGAAGACCGG
Seq A exon
GCGCGGTGGCTCACGCCTGTAATCCCAGCACTTGGGAGGCCAAGGCAGCCGGATCACCTGAGGTCAGGAGTTCAAGCAGCCACGTCACCTGAG
Seq C2 exon
GGTCATGTAGGTACAACAGCAACCAAGAAGATCGATGTCTACCTCCCTCTGCACTCGAGCCAGGACAGACTGCTGCCAATGACCGTGGTGACAATGGCCAGCGCCAGGGTGCAGGACCTGATCGGGCTCATCTGCTGGCAGTATACAAGCGAAGGACGGGAGCCGAAGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119487-'32-31,'32-29,80-31=AN
Average complexity
A_C3
Mappability confidence:
75%=43=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.006
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF054227=SIN1=PU(10.7=96.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGAAGCTCTGGGGGAAGA
R:
CGCTTGTATACTGCCAGCAGA
Band lengths:
176-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains