HsaEX6063348 @ hg19
Exon Skipping
Gene
ENSG00000107021 | TBC1D13
Description
TBC1 domain family, member 13 [Source:HGNC Symbol;Acc:25571]
Coordinates
chr9:131550613-131553054:+
Coord C1 exon
chr9:131550613-131550686
Coord A exon
chr9:131552153-131552228
Coord C2 exon
chr9:131553014-131553054
Length
76 bp
Sequences
Splice sites
3' ss Seq
GCCATTATTGCTTATAACAGGGG
3' ss Score
4.79
5' ss Seq
AAGGTGTTA
5' ss Score
0.11
Exon sequences
Seq C1 exon
AATTGCAGATTTCCAGGATGTCCTGAAGGAGCCCTCAATTGCATTGGAAAAGCTGCGGGAACTCAGCTTTAGTG
Seq A exon
GGGGAACTGACCTGAATTAGGATGACATGGTGGTGGTAAAGGCTGCTCCTGAGGAAGGAATATCAAGGATGAGAAG
Seq C2 exon
GCATCCCCTGTGAGGGCGGACTGCGGTGCCTCTGCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107021-'1-2,'1-1,2-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0056613=RabGAP-TBC=PU(7.3=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGATTTCCAGGATGTCC
R:
CTTCCAGCAGAGGCACCG
Band lengths:
113-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)