HsaEX6063925 @ hg19
Exon Skipping
Gene
ENSG00000165643 | SOHLH1
Description
spermatogenesis and oogenesis specific basic helix-loop-helix 1 [Source:HGNC Symbol;Acc:27845]
Coordinates
chr9:138585253-138588651:-
Coord C1 exon
chr9:138588458-138588651
Coord A exon
chr9:138586896-138587109
Coord C2 exon
chr9:138585253-138586303
Length
214 bp
Sequences
Splice sites
3' ss Seq
GCATCTGACTTCTCTCCCAGAAC
3' ss Score
7.93
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
AACCCCAGATGTGAAGGCGTTTCTGGAAAGTCCTTGGTCCCTGGATCCAGCGTCGGCCAGCCCAGAGCCCGTGCCGCACATCCTTGCGTCCTCCAGGCAGTGGGACCCCGCGAGCTGCACGTCCCTGGGCACGGACAAGTGTGAGGCACTGTTGGGGCTGTGCCAGGTGCGGGGTGGGCTGCCCCCTTTCTCAG
Seq A exon
AACCTTCCAGCCTGGTGCCGTGGCCCCCAGGCCGGAGTCTTCCTAAGGCTGTGAGGCCACCCCTGTCCTGGCCTCCGTTCTCGCAGCAGCAGACCTTGCCCGTGATGAGCGGGGAGGCCCTTGGCTGGCTGGGCCAGGCTGGGCCCCTGGCCATGGGGGCTGCACCTCTGGGGGAGCCAGCCAAGGAGGACCCCATGCTGGCGCAGGAGGCCGG
Seq C2 exon
GTCTGCGTTGGGGTCTGATGTGGACGATGGGACGTCCTTCCTGCTGACTGCTGGTCCCAGCTCGTGGCCGGGTGAGTGGGGCCCTGGGTTCAGGGCTGGTCCCCCCGCGTAAGCACCTGATATGAGCTGGGGAATTGGGACTCAGGCCTAGCGTGTGTCAGGGGGCCCCAGGGTCTGTGTCTGAGCCCCCGTTTTCTCCACCGTTGGTGCTTAGCTGTTGGGCCGTGTCTGGTATTGAGCGTTATAGGTGATATGTGAGTGTGTGAGTGAACGTGATGTGGACGAGCCTGCATGAGAGCTGGCGGTGCTTGGAGCCCTGTATTCTTCCCCTTGACCCTGTGTCAGCGAGGCCCCTGGTCCAGCCCGTGCTGGCCGGCAAAGGTGTATGGCCCTGTGACATGGCGTGTGTCCATTCCATTTAGGATTTAGTGTTTGGGAGCCCGTTCCTGGTTCTGGTCCAACAGGTGTCCTGGGTCTGGGGCCACCAGGTATGAGCTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165643-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=0.843 C2=0.795
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAGTCCTTGGTCCCTGGA
R:
CATATCAGGTGCTTACGCGGG
Band lengths:
294-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)