HsaEX6064134 @ hg38
Exon Skipping
Gene
ENSG00000184925 | LCN12
Description
lipocalin 12 [Source:HGNC Symbol;Acc:HGNC:28733]
Coordinates
chr9:136949551-136952441:+
Coord C1 exon
chr9:136949551-136949668
Coord A exon
chr9:136951275-136951396
Coord C2 exon
chr9:136952320-136952441
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTTTATATTTTTAGAGA
3' ss Score
8.45
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
CCAGCGCCCAGGACCGTGTCTGGGAAAAGGTCTTTGCCCGGAGAGTGGGAAGAGAGAGGGGAGGGTGAGCAGAGGACAGGCCGGGAGTTTTCCGGGAACGGAGGAAGAGCAGTGGAGG
Seq A exon
AGATGAGATCTCAGTCTTGCCCAGGCTGGAGTCCAGTGGCACAATCATAGCTTACTGCAGGCTCAAACTCCTGGGCTAAAGCAATCCTCCCACCTCAGCCTCTCAAGTAGCTGGGACCACAG
Seq C2 exon
CTGCCAGGATGAGGCTGCTGTGTGGCCTGTGGCTGTGGCTCTCCTTGCTGAAAGTCCTGCAGGCCCAGACCCCAACCCCCCTGCCACTCCCGCCCCCGATGCAGAGCTTCCAAGGAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184925_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.184
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGGACCGTGTCTGG
R:
TGGTTTCCTTGGAAGCTCTGC
Band lengths:
234-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains