HsaEX6065727 @ hg19
Exon Skipping
Gene
ENSG00000187950 | OVCH1
Description
ovochymase 1 [Source:HGNC Symbol;Acc:23080]
Coordinates
chr12:29629139-29630406:-
Coord C1 exon
chr12:29630274-29630406
Coord A exon
chr12:29630035-29630165
Coord C2 exon
chr12:29629139-29629232
Length
131 bp
Sequences
Splice sites
3' ss Seq
TTTCCCCAATGCTTCCACAGGGT
3' ss Score
10
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTCTGTGGAAAAATATTGCCTTCACCATTGCTGGCAGAGACCAGTGAGGCCATGGTTCCATTTGTTTCTGATACAGAAGACAGTGGCAGTGGCTTTGAGCTTACCGTTACTGCTGTACAGAAGTCAGAAGCAG
Seq A exon
GGTCAGGTTGTGGGAGTCTGGCTATATTGGTAGAAGAAGGGACAAATCACTCTGCCAAGTATCCTGATTTGTATCCCAGTAACACAAGGTGTCATTGGTTCATTTGTGCTCCAGAGAAGCACATTATAAAG
Seq C2 exon
TTGACATTTGAGGACTTTGCTGTCAAATTTAGTCCAAACTGTATTTATGATGCTGTTGTGATTTACGGTGATTCTGAAGAAAAGCACAAGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187950-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(44.9=77.8)
A:
PF0043115=CUB=PU(36.4=90.9)
C2:
PF0043115=CUB=FE(28.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGTGGAAAAATATTGCCTTCACC
R:
TAACTTGTGCTTTTCTTCAGAATCAC
Band lengths:
226-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)