HsaEX6065740 @ hg19
Exon Skipping
Gene
ENSG00000187950 | OVCH1
Description
ovochymase 1 [Source:HGNC Symbol;Acc:23080]
Coordinates
chr12:29592261-29597213:-
Coord C1 exon
chr12:29597078-29597213
Coord A exon
chr12:29596294-29596433
Coord C2 exon
chr12:29592261-29592367
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTGTTTCATCTATGCCATAGTTG
3' ss Score
5.61
5' ss Seq
TAGGTAACT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GTCCAAAGGACAGTAAAATAACCAGACTTTCCCAAAGTTCAAACAGAGAGCACTTGGTCCCTTGTGAGGATGTTCTTCTGACCAAGCCAGAAGGGATCATGCAGATCCCAAGAAATTCTCACAGAACTACTATGGG
Seq A exon
TTGCCAATGGAGATTAGTAGCCCCTTTAAATCACATCATTCAGCTTAATATTATTAACTTCCCGATGAAGCCAACAACTTTTGTCTGTCATGGTCATCTGCGTGTTTACGAAGGATTTGGACCAGGAAAAAAATTAATAG
Seq C2 exon
CTTCATTCGCTGGAACTCTGGCAATGATACTGACAAAAGACATATTAAAAAGAGAAAAACTGAATTTTATTAACACATATATCATGCATATATGGGAAAATTCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187950-'23-24,'23-23,24-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(25.3=52.2)
A:
PF0043115=CUB=FE(49.5=100)
C2:
PF0043115=CUB=PD(24.2=63.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAAGGACAGTAAAATAACCAGAC
R:
CACTGAATTTTCCCATATATGCATGA
Band lengths:
242-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)