HsaEX6078507 @ hg38
Exon Skipping
Gene
ENSG00000198185 | ZNF334
Description
zinc finger protein 334 [Source:HGNC Symbol;Acc:HGNC:15806]
Coordinates
chr20:46504214-46509622:-
Coord C1 exon
chr20:46509605-46509622
Coord A exon
chr20:46504614-46504740
Coord C2 exon
chr20:46504214-46504306
Length
127 bp
Sequences
Splice sites
3' ss Seq
GATTAAACATTTTCTTTCAGATA
3' ss Score
8.03
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
ATGGAAAATGAGAAGGAG
Seq A exon
ATACCAGTTTCATTCCAGGACCTGACTGTGAACTTCACCCAAGAGGAATGGCAGCAACTGGACCCTGCTCAGAGGCTCCTGTACAGGGATGTGATGCTGGAGAACTACAGCAACTTGGTCTCTGTGG
Seq C2 exon
GGTATCATGTTAGCAAACCAGATGTGATTTTCAAATTGGAGCAAGGAGAAGAGCCATGGATAGTGGAGGAATTCTCAAATCAGAACTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198185-'5-13,'5-11,9-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains