HsaEX6079505 @ hg19
Exon Skipping
Gene
ENSG00000184647 | PRSS55
Description
protease, serine, 55 [Source:HGNC Symbol;Acc:30824]
Coordinates
chr8:10390416-10402708:+
Coord C1 exon
chr8:10390416-10390558
Coord A exon
chr8:10397768-10399065
Coord C2 exon
chr8:10402482-10402708
Length
1298 bp
Sequences
Splice sites
3' ss Seq
CCTGTCTTCCCCTCATGTAGACC
3' ss Score
8.96
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTGACAAAAACTCTGTGAAAACGGATCTGATGAAAGCGCCAATGGTCATCATGGACTGGGAGGAGTGTTCAAAGATGTTTCCAAAACTTACCAAAAATATGCTGTGTGCCGGATACAAGAATGAGAGCTATGATGCCTGCAAG
Seq A exon
ACCCAGCGCTGCCGCGTGCTTCTTTCCTCTGGATTCGAATTTCCTGGGCCACCACCGAAGATGCAAAGGCAAATTCAGGAAATGCAAATCCTTAAATGGAAGCTTGGGCTTTTCCTGGGGACCTACAGCCTGGCTGAGTGTTCTCCAGAAAGAGACTGAAGAAAAGCTTCCTGGTTGGGCGAGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGATGGGTGGATCACCTAAGGCCAGGAGTTCAAGACCAGTCTGGCCACCACGGTGAAACCCCGTCTCTACTTTAAAAAATACAAAAGTTAGCCGGGTGTGGTGGCGGGCACCTGTAATCCCAGCCAATCGGGATCCTGAGGCAGGATAACGGCTTGAACCCAGGAGGTGGAGGTTGCAATGAGCGGAGATCACGCCACTGCACTCCGGCCTGGGCATCAAGAGTGAACTCTATCTCCAAAAAAAAAGAAAAAAGAAAAAAAGCTTCCTAGTTATCCTTTTTCCCACTCTAACCCTACTCCTCCAGAGGTCCTACAGCTACAATGTCTAGAAGCCATTTTTTCAGAAGCTCCTAAGAACCTGGGACTCAGGCAGGCCCAGTGGAGGGTGGCCAGCTGGAGTGTTCACCATCTCAGGACATCACCACTGTCCACTCCACTTTCCTGCTCACCGCCCTCTGACTTCTGTGTGGGGGCCCTCCCTTTTCACCCACTCTCCAATTTGCATAGTTCTGGATGGCTGGCCCTTTGCTGGGGGCTGGGGTGGGCATAGAACTCGAGCCTGGCCTAGAAGGACATTGATTTTGGCCACAGGGATGGGAGCAGCAATGGGCTGTGGGCTTTATAGGTCACAAGAGCAAGACCAAGACTTCTGCTGGAGTTATCAGGAACAAGACTGACTGACTCTCCTGGGACTCCCAACATGGTAGGGTGCATGTTGAAGGTACTGCTCATGTGAAGGCTGCTGGGGAGTGTGGTGGTTCCTTTTGTCTGTCAACTTGGAGGGGATCTGTGGATGAGATTGATGTTTAAATTGGTAAACTGTGACGAAGCAGATTGCCCTCCATAATGGGGTGAGCCTCATCCAATCCGTTGAAGGCCTGAGTAGGACAAAAATGATTGGCCTCCCCACACAAGAGGGAATTCCTCAGCCGCCCACCTTCAGACTTCATCTGCATTGTCAGCTCTTCTGGGGCTCTGCCTGCCAGTCTCTAAACCAGAGCAGCACCACCAGCTCTCCTGCATCTCGAGCCTGCCAGTCCACACCCCAGGTTTGAGCTTGCCAGTCTCTGTAATCAG
Seq C2 exon
GGACAGAAAACTGACTGTGTGCTCTGTTGACCCAGCCTCAACAAACAGGACATGGTGGCCTGCACCTGTGCTTCTCAGACCATCTGTGAGGAAAAAGACCAGGGCTTTTGGTTTTTGGTTTTGCTTCGAAATTTCCAACTTATTTCAAACCAATACTTTCATAAAACATAAAATTGAACTACTCGAAAAATGAAATCGAAAATGAACAAATAAAATGCAAGCCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184647-'4-7,'4-6,6-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=NA
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.6=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAAAGCGCCAATGGTCA
R:
TGTGGGCTTGCATTTTATTTGTTCA
Band lengths:
343-1641
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)