HsaEX6080104 @ hg38
Exon Skipping
Gene
ENSG00000120903 | CHRNA2
Description
cholinergic receptor nicotinic alpha 2 subunit [Source:HGNC Symbol;Acc:HGNC:1956]
Coordinates
chr8:27470986-27479296:-
Coord C1 exon
chr8:27478824-27479296
Coord A exon
chr8:27475213-27475272
Coord C2 exon
chr8:27470986-27471194
Length
60 bp
Sequences
Splice sites
3' ss Seq
TGCTTCCACTTTTTACACAGCTG
3' ss Score
6.81
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
AGAGAGGCTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGAGAGAGAGAGAGAACAGCGTGAGCCTGTGTGCTTGTGTGCTGAGCCCTCATCCCCTCCTGGGGCCAGGCTTGGGTTTCACCTGCAGAATCGCTTGTGCTGGGCTGCCTGGGCTGTCCTCAGTGGCACCTGCATGAAGCCGTTCTGGCTGCCAGAGCTGGACAGCCCCAGGAAAACCCACCTCTCTGCAGAGCTTGCCCAGCTGTCCCCGGGAAGCCAAATGCCTCTCATGTAAGTCTTCTGCTCGACGGGGTGTCTCCTAAACCCTCACTCTTCAGCCTCTGTTTGACCATGAAATGAAGTGACTGAGCTCTATTCTGTACCTGCCACTCTATTTCTGGGGTGACTTTTGTCAGCTGCCCAGAATCTCCAAGCCAGGCTGGTTCTCTGCATCCTTTCAATGACCTGTTTTCTTCTGTAACCACAG
Seq A exon
CTGATTGATGAACTGCACTGCATTCTGATGGAAGAGTGGAGTCAAATCTACACAGTTTGG
Seq C2 exon
GTTCGGTGGTGAGAGGAAGCCTCGCAGAATCCAGCAGAATCCTCACAGAATCCAGCAGCAGCTCTGCTGGGGACATGGTCCATGGTGCAACCCACAGCAAAGCCCTGACCTGACCTCCTGATGCTCAGGAGAAGCCATGGGCCCCTCCTGTCCTGTGTTCCTGTCCTTCACAAAGCTCAGCCTGTGGTGGCTCCTTCTGACCCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120903_MULTIEX1-3/3=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0315410=Atrophin-1=PU(5.4=12.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGCCCAGAATCTCCAAG
R:
CTGCTGCTGGATTCTGTGAGG
Band lengths:
135-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains