HsaEX6082522 @ hg19
Exon Skipping
Gene
ENSG00000169436 | COL22A1
Description
collagen, type XXII, alpha 1 [Source:HGNC Symbol;Acc:22989]
Coordinates
chr8:139838901-139845393:-
Coord C1 exon
chr8:139845282-139845393
Coord A exon
chr8:139839417-139839591
Coord C2 exon
chr8:139838901-139839024
Length
175 bp
Sequences
Splice sites
3' ss Seq
TCTGGGGTCTCTCTTATAAGGGC
3' ss Score
6.96
5' ss Seq
AAGGTATAT
5' ss Score
7.84
Exon sequences
Seq C1 exon
GTTTTGACCTGATGGATTTGTTCAGTGTGAAGGAAATCTTGGGGAAGAGAGAGAATGGAGCTCAGAGTTCCTATGTACGGATGGGATCCTTCCCTGTGGTGCAAAGTACTGA
Seq A exon
GGCACAAATCCCATTCGTGAGCTTTCTGCCCTCAAGACCTAATCACCCGCCACCAAAACCCCATCTGCTGTTACCATCACCTTGGTGTGAAGATTTCAACATATGGATTTAGGAAGACAGCAACATTCAGACCATGGCATCCTGGCATCTGGGACAGGGCACCAAGCAGGATAAG
Seq C2 exon
GGATGTGTTCCCCCAAGGTTTACCTGATGAGTACGCCTTTGTCACAACCTTCCGGTTCAGGAAAACCTCTCGGAAGGAAGACTGGTATATCTGGCAGGTCATCGACCAGTACAGCATCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169436-'5-6,'5-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.108 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0221019=Laminin_G_2=PU(14.5=38.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGACCTGATGGATTTGTTCAGTG
R:
CTGTGGGATGCTGTACTGGTC
Band lengths:
234-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)