HsaEX6088734 @ hg19
Exon Skipping
Gene
ENSG00000156515 | HK1
Description
hexokinase 1 [Source:HGNC Symbol;Acc:4922]
Coordinates
chr10:71029740-71042406:+
Coord C1 exon
chr10:71029740-71029864
Coord A exon
chr10:71030763-71030852
Coord C2 exon
chr10:71042285-71042406
Length
90 bp
Sequences
Splice sites
3' ss Seq
GGCTCGATCCTTATACACAGAAG
3' ss Score
3.28
5' ss Seq
TCTGTAAGA
5' ss Score
4.08
Exon sequences
Seq C1 exon
AGAACTCCAGAGAGGGAAAACATCTATCTTGCTGTGTTTGGACAGGCCAGCCCCTGAAACATCTTGGGCAATGGAGGGTTAACTTCTCAAAGTTTAATAGGCAAGACCAGCAACCATGCAACAAG
Seq A exon
AAGATACTCTATAAATGATGATTCAATGAATGCCAAGCCCTGTTCTATGCACTGAAGACCAAAAGAAATAAAAGACATCATTCCTGCTCT
Seq C2 exon
GACTTCAACTAACCAACTAAAGAACTGTTCCCCAGAGCATTGTTCCTGAGAAGGAAAAGAGTCCAAACACCTACCCACACCTGCTTTGTGCCAAGAATCCACAGTTGGATTGCAAGGACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156515-'0-4,'0-0,1-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGCTGTGTTTGGACAGGC
R:
AGGTGTGGGTAGGTGTTTGGA
Band lengths:
181-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)