HsaEX6089762 @ hg19
Exon Skipping
Gene
ENSG00000187122 | SLIT1
Description
slit homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:11085]
Coordinates
chr10:98825772-98917646:-
Coord C1 exon
chr10:98917575-98917646
Coord A exon
chr10:98861108-98861198
Coord C2 exon
chr10:98825772-98825843
Length
91 bp
Sequences
Splice sites
3' ss Seq
TCATGTTTAAATTCCCCCAGGGT
3' ss Score
7.96
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCGACTGAACCGAAACCAGCTGCACATGTTACCGGAACTGCTGTTCCAGAACAACCAGGCTTTGTCAAGACT
Seq A exon
GGTCTGATTTCCTTTGTGTGAGCACTCCGCCACTAGGGGTTCTTTGGCTGGCAAGAGAAACTAGAGAAGTTTTGCTTCCAGGAGGGGAGAG
Seq C2 exon
GGACTTGAGTGAGAACGCCATCCAGGCCATCCCCAGGAAAGCTTTTCGGGGAGCTACGGACCTTAAAAATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187122-'3-9,'3-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=28.0)
A:
NA
C2:
PF138551=LRR_8=PU(8.2=20.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTGAACCGAAACCAGCTG
R:
AAATTTTTAAGGTCCGTAGCTCCCC
Band lengths:
143-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)