HsaEX6091324 @ hg38
Exon Skipping
Gene
ENSG00000214279 | SCART1
Description
scavenger receptor protein family member [Source:EntrezGene;Acc:619207]
Coordinates
chr10:133453928-133459326:+
Coord C1 exon
chr10:133453928-133454064
Coord A exon
chr10:133456237-133456554
Coord C2 exon
chr10:133457279-133459326
Length
318 bp
Sequences
Splice sites
3' ss Seq
CTGGACCTGTCTGTCTGTAGGTG
3' ss Score
10.28
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GGGCTGTGACCTCTGCCATTGCCCCAGCTAAGCAGCGAGAGCTTGCTGAAGCCCAGAGGGCTGTGGGACCATGAGGGCAGCTCTCTGGACCCTGGGACTCGGGCCCCTTCTTCTGAATCTCTGGGCAGTCCCCATTG
Seq A exon
GTGGACCAGGTGCTCTGAGGCTGGCGTACAGACACAGCACGTGCGACGGAGTGGTGTTGGTCCGACACCACGGGGCATGGGGATACGTGTGCAACCAGGAGTGGACGCTGGCAGAGGCCTCTGTCGTGTGCAGGCAGCTGGGCTGCGGCCCTGCCGTGGGCGCCCCCAAGTATGTCCCGCTGCCTGGAGAGATGGCCCAGCCCTGGCTTCACAACGTGTCCTGCCGGGGCAACGAGTCCTCCCTCTGGGAGTGCAGCCTTGGCTCATGGTGCCAGAGCCCGTGCCCCCACGCATGGGTGGTGGTCGCGCTGTGCTCCA
Seq C2 exon
ACGGCACTTTCCGGGAGCTCCGGCTGGTGAAGGGCCGCAGTCCCTGCGCGGGACTCCCCGAGATCAGAAACGTGAATGGGGTGGACCGCCTCTGTGTCCTGCATGTGGAGGAGGCCATGGTGTTCTGCCGGGAGCTGGGGTGCGGCCCTGTGCTCCAGGCCCCCCGCCGGGACGTGGGCGTCGTCAGGAAGTACCTGGCCTGCAGGGGTACCGAGCCCACCATCCGCAGCTGCAGACTGGACAACAACTTCCGCAGCGGCTGCGACCTGCGGCTGGACGCAGAGGTGGTCTGCTCAGGTGAGGCTGCCACCTGATGTTCCCAGTGACCCTTGGGATGATGCTGGGCCCGGACCTGGGGAGGGCAGGGAGAAGGGGGGTGGGCGTTCCCACGGATGGGCCCCCCTGTCCTGCATGAGACATTGGGCGCAGAGGTGGGAAAGGGCCTCAGCTCTCACGCTGGTTCTCAGCAGAGTGGAGCTGAGTTTCTGGTGGCCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214279-'0-4,'0-0,1-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=90.7)
C2:
PF0053013=SRCR=WD(100=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGGCCCCTTCTTCTGAATC
R:
GAACATCAGGTGGCAGCCTC
Band lengths:
358-676
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains