HsaEX6092669 @ hg19
Exon Skipping
Gene
ENSG00000167785 | ZNF558
Description
zinc finger protein 558 [Source:HGNC Symbol;Acc:26422]
Coordinates
chr19:8932679-8935093:-
Coord C1 exon
chr19:8934758-8935093
Coord A exon
chr19:8933305-8933400
Coord C2 exon
chr19:8932679-8932767
Length
96 bp
Sequences
Splice sites
3' ss Seq
AGCATTCCCGTTTCTTCCAGAGC
3' ss Score
7.93
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GAATTCAGGAGCAGCTTGGCTGGAAGGCTCTGGCTGGAAACTTGCAGAAGGCTGTCAGCTGGGTCTGCATCATCTGAAGGCTCAACGGGTACCGGGGGCCACTCCATGGCCTGCGAGTCAGAGCTGGCCGTCGGTGGGAGGCCTCAGTTCCTCTCCACATAGGCCTCTCCACAGGGCCACTTGAGCGTCTTCCCACCATGGCAACTGGTGTCCTCTAGAGCAACATCCAGGAGACCAAGGCGGAAGCAGCTGTAGTGCCTTCCAAGACCTGGTCCTGAAAGTCACCCCTGCACCCACCCCCGCTGTCTCCTCAGCCATATTCTGCTGGTCACACAG
Seq A exon
AGCGCTGCGGGATAAAGGAGGAGCGTCCTGCTTCCCGGCTGCCCTGTTGCTGTCGGAGTCACAGGATGGCGGCTGTCATCCTGCCCTCGACTGCTG
Seq C2 exon
CTCCGTCTTCCCTGTTCCCAGCCTCTCAGCAAAAAGGACACACACAGGGCGGAGAGCTGGTTAATGAGCTCCTGACAAGCTGGCTACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167785-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.275
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACATCCAGGAGACCAAGGC
R:
CGCCCTGTGTGTGTCCTTTTT
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)