HsaEX6092701 @ hg19
Exon Skipping
Gene
ENSG00000198028 | ZNF560
Description
zinc finger protein 560 [Source:HGNC Symbol;Acc:26484]
Coordinates
chr19:9584875-9608891:-
Coord C1 exon
chr19:9608804-9608891
Coord A exon
chr19:9585960-9586045
Coord C2 exon
chr19:9584875-9585001
Length
86 bp
Sequences
Splice sites
3' ss Seq
ATGCCTTCTTTCTTTTCCAGGTC
3' ss Score
13.29
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
AGGGAAAAGAATTTTGCCGTTCGCGTTCGATTGACTCCGTCCCCAAGATCCTGTAGCCCCACGGACCTGGCGACTCCACCGTGTTCGG
Seq A exon
GTCTTTCTAGGAACCCAATCTGCCTTCATGAAGAAAAGACAGAGGCAGAAAGGAAGATGGCTTACTGCCTGACAAATTGTTATCAG
Seq C2 exon
TACTCCGTGACCTTTGAGGATACAGCTGTGGACTTCACCCAGGAGGAGTGGATTTTACTGGACCCAGTTCAGAGAAACTTATACAGAGATGTGATGCTGGAGAATTATGAGAACGTGGCCAAAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198028-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGTCCCCAAGATCCTGTAG
R:
GGCCACGTTCTCATAATTCTCCA
Band lengths:
173-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)