HsaEX6095524 @ hg19
Exon Skipping
Gene
ENSG00000159917 | ZNF235
Description
zinc finger protein 235 [Source:HGNC Symbol;Acc:12866]
Coordinates
chr19:44803759-44809178:-
Coord C1 exon
chr19:44809124-44809178
Coord A exon
chr19:44807543-44807605
Coord C2 exon
chr19:44803759-44803885
Length
63 bp
Sequences
Splice sites
3' ss Seq
GATGCCTTTCCCTCCCTCAGGTT
3' ss Score
10.83
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GGAGGCACTTCCGCTCCAGGAAGGCGAGGTCGGATCTGAGATATCTCCCAGGGAG
Seq A exon
GTTCACTTCCCCGGAACTCTGCCTTTTCCCAGAAGGAGGAGGGGAAAAATGACCAAGTTCCAG
Seq C2 exon
GAGGCAGTGACATTCAAGGATGTGGCTGTGGCCTTCACTGAGGAGGAGCTGGGGCTGCTGGACTCTGCCCAGAGGAAGCTGTACCGAGATGTGATGCTGGAGAACTTTAGGAACCTGGTTTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159917-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGAGGTCGGATCTGAGATA
R:
TCTCCAGCATCACATCTCGGT
Band lengths:
136-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)