HsaEX6096539 @ hg38
Exon Skipping
Gene
ENSG00000180257 | ZNF816
Description
zinc finger protein 816 [Source:HGNC Symbol;Acc:HGNC:26995]
Coordinates
chr19:52949379-52956104:-
Coord C1 exon
chr19:52956027-52956104
Coord A exon
chr19:52952751-52952877
Coord C2 exon
chr19:52949379-52951584
Length
127 bp
Sequences
Splice sites
3' ss Seq
AAACGTGTTTTTTATTTTAGGGA
3' ss Score
9.83
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
GATTTCCAAAGACTCATGTTACGTGAGGAAGCCACCAAGAAGAGCAAAGAAAAGGAGCCAGGGATGGCTCTTCCTCAG
Seq A exon
GGACGCTTGACTTTCAGGGATGTGGCTATAGAGTTCTCTTTGGAGGAGTGGAAATGCCTGAACCCTGCACAGAGGGCTTTATACAGGGCTGTGATGTTGGAGAACTACAGGAACCTGGAGTTTGTGG
Seq C2 exon
ATAGCTCTTTAAAATCCATGATGGAGTTCTCATCAACCAGGCACAGTATTACAGGAGAAGTGATCCACACAGGGACGTTGCAAAGACATAAAAGTCATCACATTGGAGATTTTTGCTTCCCAGAAATGAAGAAAGATATTCATCACTTTGAGTTTCAGTGGCAAGAAGTTGAAAGAAATGGCCATGAAGCACCCATGACAAAAATCAAAAAGTTGACTGGTAGTACAGACCGAAGTGATCACAGGCATGCTGGAAACAAGCCTATTAAAGATCAGCTTGGATTAAGCTTTCATTCGCATCTGCCTGAACTCCACATGTTTCAGACTAAAGGGAAAATTAGTAACCAATTGGACAAGTCTATCGGTGCTTCCTCAGCTTCAGAATCCCAAAGAATTTCTTGTAGGCTCAAAACTCATATTTCTAATAAGTATGGGAAGAATTTCCTCCATTCTTCATTCACACAAATACAGGAAATATGCATGAGAGAAAAACCTTGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180257-'4-8,'4-5,6-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=0.000 C2=0.105
Domain overlap (PFAM):
C1:
NO
A:
PF139001=GVQW=PD(20.5=18.6)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAAGCCACCAAGAAGAGC
R:
ATGGGTGCTTCATGGCCATTT
Band lengths:
250-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains