HsaEX6096549 @ hg38
Exon Skipping
Gene
ENSG00000203326 | ZNF525
Description
zinc finger protein 525 [Source:HGNC Symbol;Acc:HGNC:29423]
Coordinates
chr19:53365707-53375896:+
Coord C1 exon
chr19:53365707-53365759
Coord A exon
chr19:53372342-53372396
Coord C2 exon
chr19:53375770-53375896
Length
55 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCTCCTTCCTTTCAGAAA
3' ss Score
11.54
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
Exon sequences
Seq C1 exon
ACGCGCGCAAACCCGGAAGCAGATCGCGTGGAGTGAAGGTCCCTCAGCGGCGC
Seq A exon
AAATGCTGACCTTGGAGTTGGGAATCTTCTAAGTCTGAAGCTTCCTGCCTGACAG
Seq C2 exon
GGTCTATTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACAGGGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000203326_MULTIEX1-2/4=C1-3
Average complexity
ME(1-2[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCGCGTGGAGTGAAGGTC
R:
TCCAGCATCACGTCCCTGTAT
Band lengths:
134-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains