HsaEX6101277 @ hg38
Exon Skipping
Gene
ENSG00000170085 | SIMC1
Description
SUMO interacting motifs containing 1 [Source:HGNC Symbol;Acc:HGNC:24779]
Coordinates
chr5:176238367-176263502:+
Coord C1 exon
chr5:176238367-176238637
Coord A exon
chr5:176261028-176261149
Coord C2 exon
chr5:176263417-176263502
Length
122 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTTTTTTTTTTCAGACG
3' ss Score
10.85
5' ss Seq
CAGGTATAC
5' ss Score
7.48
Exon sequences
Seq C1 exon
GCTCGGGGCGGGGCCGGCGTGGCGGTGGCCCGGGTTGTAGCCGCCGCCGCTGCCGCCGCCCCGCCGCCGCCACCTCAGAAGCAGGAACCGAAGTCGTCGCCGCCGCCGCCACTGCCTGGGTCTTCGGTCGGGGCCCGCAGCCATGGAGGATTTCATCGTGATCTCGGACGACAGCGGCTCTGAGAGCTCCGGGGGCGCCCGCCCGGGCCGGTCGCGGAGGCCGCGCCGGGCCCTGTCGCGAACCTCCGGCGCGCTGCCCCGCCGGACCGTG
Seq A exon
ACGGTGTCTTGCTGTGTCACTCAGGCTGGAGTGCAGTCGCACAACCTCAGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCTTCCTGAGTAGCTGGGATTACAG
Seq C2 exon
GCTGAACAAGAAGCATGGCACCAGCATCTGCTTCTGGTGAGGACCTCAGGAAGCTTCCAACCATGGCAGAGGTGAATGGGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170085-'0-18,'0-5,3-18
Average complexity
C3
Mappability confidence:
100%=100=75%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.846 A=0.519 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGAAGCAGGAACCGAAG
R:
GTCCTCACCAGAAGCAGATGC
Band lengths:
243-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains