HsaEX7000206 @ hg38
Exon Skipping
Gene
ENSG00000142973 | CYP4B1
Description
cytochrome P450 family 4 subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:2644]
Coordinates
chr1:46764978-46767644:+
Coord C1 exon
chr1:46764978-46765101
Coord A exon
chr1:46765685-46765843
Coord C2 exon
chr1:46767525-46767644
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTACCATTGCAGGCA
3' ss Score
10.89
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
Exon sequences
Seq C1 exon
ATGGGAGTTTAGCTCTTGTTGCCCAGCCTGGAGTGCAGGGCTGTGATCTTGGCTCACTGCAACCTCCGCTTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGTATTACAG
Seq A exon
GCACAGCTACAAGGAACACCCTTCATTGGTCTCTGGGTATAATTATAGGAATTGGGTATGTGGCTAGAAGAAGAATCACTGGGTGGTGAGGTTTGTGCTTCTGCAAGTTTACCAAGCATTGCCACAGTGCTCTTCAGTTTATACTCCTCATAGAAATAG
Seq C2 exon
GTGTAAGATATTGTTAAGACGCACTATCTTAGCATGAGACGGGACTTCTTCCAACCCTCCTATGGAACAGATGGGCAGACTGAGGACCTGAGAAGGAATCTACTTGCCCAGGATCACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142973-'1-4,'1-1,2-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAGTTTAGCTCTTGTTGCC
R:
TGTGTGATCCTGGGCAAGTAGA
Band lengths:
243-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains