HsaEX7004312 @ hg38
Exon Skipping
Gene
ENSG00000146839 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:100736483-100737349:+
Coord C1 exon
chr7:100736483-100736629
Coord A exon
chr7:100736809-100737080
Coord C2 exon
chr7:100737262-100737349
Length
272 bp
Sequences
Splice sites
3' ss Seq
TTGGGCTCTGCCTCCCCCAGAGG
3' ss Score
7.59
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
ATGTCCTCACCCAGTGTGATTTTGAGGATGACGCCAAACCCCTCTGTGACTGGTCCCAAGTGTCCGCAGACGATGAAGACTGGGTTCGAGCCAGTGGGCCCTCTCCCACCGGCTCCACCGGGGCCCCCGGGGGGTACCCTAACGGAG
Seq A exon
AGGGCAGCTATCTGCATATGGAATCGAACAGCTTCCACCGTGGGGGAGTGGCCCGCCTGCTCAGCCCCGACCTATGGGAGCAAGGCCCCCTCTGTGTGCACTTTGCCCACCACATGTTCGGGCTGTCTTGGGGCGCCCAGCTCAGGCTGCTGCTGCTCTCGGGTGAAGAGGGCCGCCGCCCCGATGTGCTCTGGAAACACTGGAACACCCAGAGACCCTCCTGGATGCTCACCACCGTCACTGTGCCCGCAGGGTTCACCCTGCCCACCCGG
Seq C2 exon
CTGATGTTTGAGGGAACACGGGGTAGCACTGCCTACCTGGACATCGCCCTGGATGCCCTCTCTATCCGCCGGGGCTCCTGTAATCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839-'3-5,'3-4,4-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.480 A=0.022 C2=0.000
Domain overlap (PFAM):
C1:
PF0062918=MAM=PU(26.8=88.0)
A:
PF0062918=MAM=FE(54.9=100)
C2:
PF0062918=MAM=PD(17.1=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGATTTTGAGGATGACGCCA
R:
GCGATTACAGGAGCCCCG
Band lengths:
220-492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains