HsaEX7005006 @ hg38
Exon Skipping
Gene
ENSG00000255101 | RP11-412B14.1
Description
NA
Coordinates
chr8:42705583-42721946:-
Coord C1 exon
chr8:42721802-42721946
Coord A exon
chr8:42714870-42714995
Coord C2 exon
chr8:42705583-42705993
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTCTCCTGAATTCTTTCTAGACC
3' ss Score
8.09
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
AGTCCATCAGCTTTTGGGGGAGCTGATGCATCCTTCTGCTCCAGGCCTGCCTCTCAGACCTGCCCACTGTGATTTTCAGGGACAACAGGCAACCAAATCAGAGTTGGCAAGACACCACAGGGCTTCTGAGACCACTGGAAAAGAG
Seq A exon
ACCAACTCCATCAGATGTTCCGGAGACTGAGGAATCAAAGCCTTAGAAGACCAGGGTTAGGAAATTATACAGCAACAGGACTAACAGGAGAACAGGACACTCTCCAAACTCTCCCTCCAGTCTAAG
Seq C2 exon
ATGATGCCAGCTCCAGGAAGTTGGGGATTGTCTTCCTCACTCCTGTATTCCCGGCTCCTAGAACAGTGACTGTCACCCAGCAGCTGTTGAGCTAATGGCTATTGAGTGGACAACCACTCGAGCAACAATGCAGTCAGCTTCGTGGACTTTGTTTTACTGAGGGGCATCTGGAGAGTTGGGACCAGAGGTGAATTGCTCAAGAGAAGAGGGAAGCAGTGAGGACACAGCTGTCCTCCTCCATCTATCCCCAGGTCAGGCAGCCCCCTCCTCTAAGGCAGAGAATATTGTTTGAAAGGCACTTGTCTTCACTTATTTTGTGCTGCTACAACAGGATACCACAACCTGAGGAATTTATAATGAACAGAAATTTATTGGCTTATGGTTCTAGAGACTGGGAAGTCCAAGATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000255101-'1-2,'1-0,6-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCATCCTTCTGCTCCAGG
R:
TTGTTGCTCGAGTGGTTGTCC
Band lengths:
249-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains