HsaEX7101721 @ hg38
Exon Skipping
Gene
ENSG00000198046 | ZNF667
Description
zinc finger protein 667 [Source:HGNC Symbol;Acc:HGNC:28854]
Coordinates
chr19:56439325-56458247:-
Coord C1 exon
chr19:56458155-56458247
Coord A exon
chr19:56444131-56444281
Coord C2 exon
chr19:56439325-56442741
Length
151 bp
Sequences
Splice sites
3' ss Seq
CGTCTTTCACCATGAGTAAGAGC
3' ss Score
-7.25
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTCTTTCCTTTCGGAGACCAAATGTGATCACCTTATTGGAGAAAGGGAAAGCACCCTGGATGGTAGAGCCAGTAAGAAGACGCCGGGCTCCTG
Seq A exon
AGCTCACTGAGGCCTCCCCAGAAGCCAAGGAGGTGCCAGCACCATGCTTGTACAGCCTACTGAACCAGGAGCCAATTGAACCTCTTTTGTTTATAAATTACCCACTCAAGTATTTATTTATAGCAATATAGGAACTTCCTAATACAAACAG
Seq C2 exon
ACTCGGGGTCTAAATGTGAGACCAAGAAGTTACCTCCAAATCAATGCAACAAATCTGGGCAAAGCATCTGCCAGAAACTAGTTTCTGCACAACAAAAAGCTCCTACACGAAAGAGTGGCTGCAACAAAAATTCAGTCCTAGTAAAACCTAAGAAAGGGCATTCAGGGAAGAAACCTTTAAAATGTAATGACTGTGGTAAAACCTTTAGTCGAAGCTTCTCTCTTAAACTTCATCAGAACATTCATACAGGAGAGAAGCCTTTTGAATGCAGTAATTGTAGAAAAGCTTTCAGACAGATCTCATCCATCCTACTTCATCAGAGAATTCACAGTGGAAAGAAAAGCCATGAATGCAATAAATGTGGGGAAAGCTTCAATCAAAGAACAACCCTTATTCTACATATGAGAATTCATGATGGAAAGGAAATTCTTGACTGTGGGAAGGCCTTGAGTCAATGTCAGTCTTTCAATATACATCAGAAAATTCATGTTGTTGGGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198046-'20-22,'20-20,23-22=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=0.116 C2=0.118
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.6),PF0009621=zf-C2H2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGACCAAATGTGATCACCT
R:
GGTTTCTTCCCTGAATGCCCT
Band lengths:
257-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains