HsaEX7102815 @ hg38
Exon Skipping
Gene
ENSG00000153250 | RBMS1
Description
RNA binding motif single stranded interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9907]
Coordinates
chr2:160367216-160416178:-
Coord C1 exon
chr2:160416138-160416178
Coord A exon
chr2:160401968-160402102
Coord C2 exon
chr2:160367216-160367391
Length
135 bp
Sequences
Splice sites
3' ss Seq
TATTATTAATGTCCCCACAGAGC
3' ss Score
9.1
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATTTGCCTTCTCTTCACTTGGGGAGTATCAATTTGCCACAG
Seq A exon
AGCAAGCAACAGCGGGTGGTCCTAGGAGACTTCTGTGTGGTCTAGGGAGACCTTGACACAGTCGCCTAAGAATGGACCGTGTTTACAGCCTCTAAGAATGGACTGTGTTTAGAATGAGGGGCAGCCTGAAAAAGG
Seq C2 exon
CAGTCTCTGGTCCCAGCCCACCCCATGGCCCCTCCCAGTCCCAGCACCACCAGCAGTAATAACAACAGTAGCAGCAGTAGCAACTCAGGATGGGATCAGCTCAGCAAAACGAACCTCTATATCCGAGGACTGCCTCCCCACACCACCGACCAGGACCTGGTGAAGCTCTGTCAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153250-'7-17,'7-14,8-17=AN
Average complexity
A_C3
Mappability confidence:
90%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.532
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0007617=RRM_1=PU(29.9=33.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGAAACAGTCCCAATTTGT
R:
GTGTGGGGAGGCAGTCCT
Band lengths:
243-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains