HsaEX7104666 @ hg38
Exon Skipping
Gene
ENSG00000122545 | SEPT7
Description
septin 7 [Source:HGNC Symbol;Acc:HGNC:1717]
Coordinates
chr7:35873641-35879940:+
Coord C1 exon
chr7:35873641-35873775
Coord A exon
chr7:35879596-35879719
Coord C2 exon
chr7:35879823-35879940
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCAATTCCTCTTTAGGGC
3' ss Score
10.8
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
CTGGCAGCCTGTTATCGACTACATTGATAGTAAATTTGAGGACTACCTAAATGCAGAATCACGAGTGAACAGACGTCAGATGCCTGATAACAGGGTGCAGTGTTGTTTATACTTCATTGCTCCTTCAGGACATGG
Seq A exon
GGCCAAAACCCTGTGACCAGGGTTCAAGGGCAGGAGTCAAAGCCTTAGCCACTCCAATGCTTCTTGAAGTCCTGTTCTACCTAACTTTTGCTGGCCTAATACATCTTCAGAGTGTTTCTGATAA
Seq C2 exon
ACTTAAACCATTGGATATTGAGTTTATGAAGCGTTTGCATGAAAAAGTGAATATCATCCCACTTATTGCCAAAGCAGACACACTCACACCAGAGGAATGCCAACAGTTTAAAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122545-'39-40,'39-39,42-40=AN
Average complexity
A_C1
Mappability confidence:
80%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=0.003
Domain overlap (PFAM):
C1:
PF0073513=Septin=FE(16.2=100)
A:
NA
C2:
PF0073513=Septin=FE(14.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCAGCCTGTTATCGACTAC
R:
ACTGTTGGCATTCCTCTGGTG
Band lengths:
242-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains