HsaEX7105501 @ hg38
Exon Skipping
Gene
ENSG00000010438 | PRSS3
Description
protease, serine 3 [Source:HGNC Symbol;Acc:HGNC:9486]
Coordinates
chr9:33750690-33796802:+
Coord C1 exon
chr9:33750690-33750727
Coord A exon
chr9:33794746-33794873
Coord C2 exon
chr9:33796643-33796802
Length
128 bp
Sequences
Splice sites
3' ss Seq
TTGCATCACCCTAAGTGCAGGTT
3' ss Score
2.09
5' ss Seq
TGAGTAAGC
5' ss Score
5.78
Exon sequences
Seq C1 exon
GGCGCGGGATGCAGACGGCTGCGAGGCGCTGGGCACAG
Seq A exon
GTTGCCAGGACAACCGTGAGGCTGCATAAAAAGAACCTATGACAGGATGCACATGAGAGAGACAAGTGGCTTCACATTGAAGAAGGGGAGGAGTGCGCCATTGGTTTTCCATCCTCCAGATGCACTGA
Seq C2 exon
TTGCTGTCCCCTTTGACGATGATGACAAGATTGTTGGGGGCTACACCTGTGAGGAGAATTCTCTCCCCTACCAGGTGTCCCTGAATTCTGGCTCCCACTTCTGCGGTGGCTCCCTCATCAGCGAACAGTGGGTGGTATCAGCAGCTCACTGCTACAAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010438-'8-12,'8-9,9-12=AN
Average complexity
A_C3
Mappability confidence:
100%=100=67%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.317 A=0.032 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0008921=Trypsin=PU(19.9=79.6)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCACAGTTTGTCCTCTGGG
R:
GATACCACCCACTGTTCGCTG
Band lengths:
257-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains