HsaEX7109080 @ hg38
Exon Skipping
Gene
ENSG00000228315 | GUSBP11
Description
glucuronidase, beta pseudogene 11 [Source:HGNC Symbol;Acc:HGNC:42325]
Coordinates
chr22:23705429-23709867:-
Coord C1 exon
chr22:23709786-23709867
Coord A exon
chr22:23709130-23709241
Coord C2 exon
chr22:23705429-23705541
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTCACCTAATTGTCTTCCAGATT
3' ss Score
9.27
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GACTGGATGGAGGACCTGAAGACGTGAGGTGGAGGCACAGGTAGAAGAGAAGATTCTCACCATCGCTGATTCACACAAAAGC
Seq A exon
ATTTCTCCAAGTGGTTGCAGATGACATGATTTCCCAAAGTGTTAGAGCTGAAGTGTGTTTCCTTGTGTATATATACTGTGGTTCCTTTATCCCTTCATCTGTGGATAGACAG
Seq C2 exon
GTGCAACCGTGTGGTTCCCCACGATATGATTTCATTGTGGTTTTCTGTCTGAAGAGTATCCCAGTATGTACCTGTGGAGCAGCTTCTTTATCCCTTCATCTGTGGATAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000228315-'4-6,'4-5,5-6=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGATGGAGGACCTGAAGA
R:
CTGCTTATCCACAGATGAAGGGA
Band lengths:
194-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains