HsaINT0000091 @ hg19
Intron Retention
Gene
ENSG00000166535 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:23336]
Coordinates
chr12:8990036-8991046:+
Coord C1 exon
chr12:8990036-8990162
Coord A exon
chr12:8990163-8990931
Coord C2 exon
chr12:8990932-8991046
Length
769 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GTCTCTGATCACCTCACTAGACT
3' ss Score
4.68
Exon sequences
Seq C1 exon
GTACACCTATGGAAAGCCCATGCTAGGGGCAGTGCAGGTATCTGTGTGTCAGAAGGCAAATACTTACTGGTATCGAGAGGTGGAACGGGAACAGCTTCCTGACAAATGCAGGAACCTCTCTGGACAG
Seq A exon
GTGAGTAAATGACAGGTTAAAAAGGAACCTATCGGCCAGGCACGGTGGCTCACGCCTGTCATCCCAGCACTTTGGGAGGCCGAGATGGGCGGATCACGAGGTCAGGAGTTTGAGACCAGCCTGACCAATATGGGGAAACCCCGTCTCTATTAAAAATTCAAAAAATTGGCTGGGCATGGTGGTGTGCACCTGAAATCCCAGCTACTTGGAGGCTGAGACAGGAGAATCACTTGAACCCGGGAGGCGGAGGTTGCAATGAGCCGAGATGGTGCCACTGCACTCCAGCGTGGGTGACAGAGCAACACTCAGTCCCCCTCCCCCACCGAAAAAAAAAAAAAAAAAAGAACGTATCCACATGTCCTAAAGCGTAAGGAAGCAACAATCTAGAAAAGAGCTAAACAGCCCAAAGTAGAAAGCATTTCCCAGAATTATCATCCCAGTTCCAAAGAACAAAGCAGGGATCTTTATCCTAAACAGGGAGTGTTTTAGAGTCTGCCTTGGAACCAAGAAATTGACCTAAACCCCAGTAAGGTACAATTTTCCAGTTTTGAAGGCATTTCTTTTTCCCTTTCCCAAATCTTGGAGCTTCAAAGTCATTTCATGATTATCTATGTGCAAGTGTATACTTCATGTTGTAGGAGAGTTTTTCTATATTAGAAACTGAAGTGTGGAGATGAGAAATTATTTCCTTCTACAGAACATTATAAAATGGATGTAGAGATTAGATTCCTCATCTGCTCTCTATCTCTGTCTCTGATCACCTCACTAG
Seq C2 exon
ACTGACAAAACAGGATGTTTCTCAGCACCTGTGGACATGGCCACCTTTGACCTCATTGGATATGCGTACAGCCATCAAATCAATATTGTGGCTACTGTTGTGGAGGAAGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166535-A2ML1:NM_144670:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGGGGCAGTGCAGGTATCT
R:
TGTCCCTTCCTCCACAACAGT
Band lengths:
219-988
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)