HsaINT0000579 @ hg38
Intron Retention
Gene
ENSG00000107331 | ABCA2
Description
ATP binding cassette subfamily A member 2 [Source:HGNC Symbol;Acc:HGNC:32]
Coordinates
chr9:137024143-137028178:-
Coord C1 exon
chr9:137028075-137028178
Coord A exon
chr9:137024237-137028074
Coord C2 exon
chr9:137024143-137024236
Length
3838 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
ACTGGGCCCACCCTTTCCAGTGG
3' ss Score
6.9
Exon sequences
Seq C1 exon
CGGGCCGCGGCGCTGAGGCGGCGGAGCGTGGCCCCGCCATGGGCTTCCTGCACCAGCTGCAGCTGCTGCTCTGGAAGAACGTGACGCTCAAACGCCGGAGCCCG
Seq A exon
GTGAGCCCACCCCACGCGCCCGCCCTCAGCCCGAGGCCGCGCGCACCGCGGCCAGAGGCGCGCTCCCCGCGCGCACGTGCGGACGGCCGGGCGCGCGCAGACCCCGGCGGGCGCTGGGGGCGGCGCGGGCCCGAGCCCCCTCCCCGCCGGGCCCTGCCCTCGCCTGCCGGCGCTGCGGCCTCCGGGGAGGTGGCTCGGTCGTGTCCAGTCCGGTCCCGCGTCCGCTGACATCGCGGTGCTCGGCTGAGTCACGGCACCCGCGCCCTCTGCAGCGCGCTCGCTGGGGCCGCTGTGGGCGGGGGGCAAGCGGCGCTCAGGACTCTGGCTCGAGGGAGGCCCTGGTTCCCAGGACAGAAGGCAGGCCTGGGGGGCTCCATTCAGCTGCGAGGCTCCATGGTCCTTGGGCCCAGCCTCCCTGGGGTCCCGGAGGAGACCCTGTCCCTTCCCTCCGTCCACCCCTCCCCTGCCCTTGGGCCGCGGCCTGCCATAGAGGTTGGTCCCAGGCATCTCTCCGCCTCCCCTCCTGGCACATCCGTGACCCTTGCTCATGCTCTCGCCACTGGGAATGTCCTTGTGCCAGCCTTGGCCAGCCTGAATCTCTGCACCCATTTGTCCTTTGGGGTCAGTTCTCCCCGAGCCTGATCCACTCTGTTGCCTCCTGGTCCCCCCACCTGCTCTGGGGGCTGGGTCTACTGTTTGGAGCTGTGAACCCCGGCTTTCCCAGCACTGCCTGGGCAGCCAGTGGACCTGAGGGTGCAGGACACATGGCTGTCAGGGACAGAAGTCCTTCGTGGAGCGAGGGGCTTGGGGATATGGGTGTCCTGCCATACCCCCAGCTGGCCAGCTTGGCTCCAGCCTGGGAAGGGAAGGGACACCTCCCAGGCCACAGGCCTGGACCAGCTTAGGTTTCTGAAGGCCCTTGGGATTGTCCAGGCCAGGGCTCAGAGCAGGTGGGGGCCTAAGGCAGACATCCTCTTGCCCAGCCAGGGCCCGGGCGGGACCCCTTGGGCTGCACCAGTCCGTGCCTGTTTATCTTTCAACATGCACTGCAGGAAACCCAGGCTGCAGTCAGCTGGGGTGGCCATCATCACCATGGCTGGCAGAATTCCCCTGGGCACCTGGCCTTGGCGGGGAGCCTGGGTTAGGTACATGCCCTGGCCAGGCACCTGGAGCTGGCTGAGTGGGGTCCCATGGATCAGGCCTGCAGCCCCTGGCATTGAGTCACTGGGGACAGCAGAGCAGGGCCAAGGGAACAGGGATGTGGCATGTGGCATGCATTAGTATTAGTCCCCGGGGGTGGTTGTCAGGAAGGTCCCCACTGGGCTTGGGAGCAGAGGCTGGAATGGTGGCCCCTGTTCCAGTGGGGACAATGCTCAGGGAAGGGAGTGTGGCCTATGAGGGCAGCTGGCAAGCAGGTGGGAGGTGTGCACTGTCCTGACCGCAAGAGTGACTCCCAGCTGCTGGTTTGGGCTGCCCCCCAGGACCTTTTTGGGTCCCCACCCTACAGGGCTCCCAGAGGCCCACTGGGCCACAGTGGAGGTCCTTAGCCCATGGCTGGAGCAGGTGGGGAACTGTTTCCCCCAGGGAGGCTGAGTCCTTGCCAGGCTTGTGATGTGGGGCTGGGGCTGGCTGGACACTGGGCACACTCCTGCTGGGTCCCCACTTTCCTGGGAAGGATCTTGGACATCAGAGCTGGACTCTTGGGGCCAAGCTTGGATGACAGAGGTTTGCCCTGTGTGCCATGCGCCCTGCTGGGGCAGGGGTGCACCCTGGGCAGAGCTCCACCCTGGGCAGAGCTCAGGGTCTGGAGGGTGGGTGCCAAGGACCTCTGTGCTGCTAGCAGGCTCCTCCAAGCTCTTTGCCTCAGTTTCCCTGTCTGTGAGTGTGGCCTATCTCCTCTTAGTTAGCTGGACTTGGGTCTACCCTTGGGCTACAGGCTGCTCTTGGTGCAGGGACAGGGTCACTGTCATGAAGTCACTGGGATGGCAGATGGCAGCGCCACCCTCGGGTCTCACCTGTTCTCCCCCCGACACAGTAGGCGGGAGCTACAGGGAGGGGTCATGCCCAGAGAAGGCATCTAGGCCTCCAGGCGATGTGAAGGCACTGGGCTGGTCTCGAGGGACGGAGGTTGGGCCACCTGGAGGCACCTGTGTGGGGCACCCAGGGCGTGCTAGACCTGTGCTGCCGCCTGTAACCAGATGCTGCTGTGGCGCCCGCCGCCTGCCAGCCAGGACTCTCCTCCTCCTCCCAGTAGCTCGTGCGAGGCCGTTGCTATAGCAATGGGGGAGGCAGCCGGGCCTGTTGCTGCAGTTACAGTGCCCATAGCAGGCCGGGTGTGGGCGGGGCTGGCGCCCCGTGCTGTGACCCCTGCCTCTGACATTGCCTCACTCCTGCAGCCACCCTCGCCCTGGTGCCTGTTGGTGCCCACAGTGCCTTGGCGAACCCTGGGCTCCGTCCTGGCTCAGGGAGCGGGTGGAGGCTGGCACGGGCTGGGGCGGGCATGGGACACCCACAGCATGATGTTCCTGGCCACAAAGCCCTATTGTCCAAGCACAGTAAACACAGCAGCCGCCCCCACCCCAGGGACCGGGGACTCGGCCCGGGCCACACAGCACACTGGGGGCTCTGAAGGGTTTTGGGATGGGGATGAGGACAAAGGATGCCTCCGAGCTGGGTGCTCGCCCTCGGGCTAGGGAGGGCAGGGCCCCTCTGTCCTGTGGGTCTCAGAGAGGGCTGGTCTGCCGAGGGCTCTCTGGAGGGTAGCTGGCTCAAGCTCCTCCTCCTCCCTGAGCTGGGGGCTGGGACACAAGAACCGGTAAAGTCCTTGGTTTTCAGGTGAAGTGAGCAAAGCACCTCTTTCTCACTCCACGCAGGTCCCACTAGGGCTCACCTTGGTGCCCAGCCTGGGTTAGCAGGAGCCGACCTGGGGAAACTGAGCTCCAAGGCCCAAGACTGGCTGCCCCGGGTCAGGAGAGGGGACAGGGCAGAAAGAGGTGCCTTTGGGCCAGGTGTGGTGGCTCACGCCCAGGTGGGCGGATCACGAGGTCAGGAGATCGACACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGAGAGGCTGAGGCAAGAGAATGGTGTGAACTTGGGGGACGGAGCTTGCAGTGAGCTGAGATCGCACCACTGTGCTCCAGCCTGGGTGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAGGTGCCTTTGCTTCAGGGACTGGGGCTGTTAGACCCCTTACCAGGTCTTCTCCGAGGCTCAGGGCCCTGGGCGCAGGCCAAGCCTCTCAACCAGGCCTCCTCATCTCCCCAGGCCCCGGTATTGGTGGGGAGGAAGTGGGAGGAAGGTGAACCCGGGGCAGTGTGGGAAGTGTAGGCGGGGCTAGTGGCTCAGATGGTCCCCAAGATTTTGCCCAGGTAGCCCTGGAGGTGGGGAGGGAGAAGATGAGCTGGGATATACATGGGTCAGAGTAGACCACAAGCTGGCCGATTTGTCCCTGTAGGCCCTGAGGCTCCTCAGAGGGCACGTAGGCCCAGTGTGGGCTGGGGACGGGAAACCTGATTTGCTGAGCCAGACAATCCTTACCCTCAGTGCCCTGGAAGGGGCTCAGACCTTCAGTGGTTCCGAAGGGCCTGTGCCCACCTTCCCTGGCCCCAGGGAGCACGTGGTCCTGTCTGGGCTGGGCCAGCCCTATGGGAGGCTGGGGAGGGCCTAGGCGAGCACAGGTCTGTCCTATCCCTCACTGGGCCCACCCTTTCCAG
Seq C2 exon
TGGGTCCTGGCCTTCGAGATCTTCATCCCCCTGGTGCTGTTCTTTATCCTGCTGGGGCTGCGACAGAAGAAGCCCACCATCTCCGTGAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107331:ENST00000464876:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development