HsaINT0003007 @ hg19
Intron Retention
Gene
ENSG00000005187 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:10522]
Coordinates
chr16:20775312-20781575:+
Coord C1 exon
chr16:20775312-20775447
Coord A exon
chr16:20775448-20781305
Coord C2 exon
chr16:20781306-20781575
Length
5858 bp
Sequences
Splice sites
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
3' ss Seq
CCTTTTTGCTTGTCTTTTAGATG
3' ss Score
10.86
Exon sequences
Seq C1 exon
CGGATTGTCAGACTGCTCCTCCCTCTTCTTTAGACTGCCACGAGGAAAAAGCAGATGTGAGAACTCAAGGTTCAGGGCTGCTCTTCTAAGAAACAAGTCTGCCATAATCTCCATCTGTGTTGGAATCTGTTAACTA
Seq A exon
GTGAGTACCTCATCTCCCCTCCTGTGTAAGATTTCCTGAACTGGCACATCTGTTTTTTGAGCAAAGATAACAAACAGATGAACAAAACCAACAATCAAAAATGCTGTCATTAAAGTCTTGGGCAGCCAAAGTTTCTCTCAGAATTTCTCAGTTGTGTGATACTATCTATTAAGTGATGAGGAGTATGCACACACAAAAGGCTATAAATGTAGCAGCTGAGTTTTCATGTTGAGCCTTTTGGTGCTATTTGATTTTTTGAAAAACTATGTACATGTATTAAGTTGATAAATTTTTTTTTTAATTTTAATTGAACCAGATGCGGTGGCTCAAGCCTGTAATCCCACCACTTTAGGAGGCTATGGTGGGCAGATGCAGATCACTTGAGGCCAGGAGTTCGAGACCAGCTTGGCCAACATGGTGAAACCCTATCTCTACTGAAAATAAAAAATTAGCCAGGTGTGGTGGCAGGTGCCTGTAACCCCAGCTACTTGGGAGCCTGAGGCAGTAGAGTCACTTGAACCTGGGAGGTGGAGTTTGCAGTAAGCTGAGATTGCATCACTGCACTCCAGCCTGGGTGACAGAACAAGACTCCATCTCAAAAAAAAGACCAGGTAGTGGCTGAGATTTTCATTGTACTGTCTGCTTAGCTCCCCACCTTGCTCAGTGACAGATGGGAATCCATCTTCTGCATCATCCAGAAAGTATGTAAATTACTTCCAGGAAACTTTGGGAAACACAGATGCAAACCTAAGAGCAGCCAGTTTTCTCCTTTAGGTGGTCAAGGGCAGCTGCAAAAGTTCTGTATAGGAGGGGCTTCAGGCAGGGTCTGGTTGGGTTTGGAGACAACAGCAGTGAATTTACCTTGCGTTGAGGCTGTATATGTTAAACTACTGTTATTACTTGGATACTTAGAGGGAGGGATGTTTAGGGAGCTGTGGGGAGGCTAAAGCCCCCTTGGCTGTAGGGACAAAGAGCTTGCATTTCAGATGAGACCTTAAATACTTTCAGAAGCCTATCTGACCAGGGGTGGTACTGTCTTTCTTAGAAGAGTTTTCCTTACCAATGTTTCTGTGGCTCAGTATAAAAATCTGGAGTCACCCTGGGAAAGTTATCTCAGCAATTTTACCTACAAATAATTTTATAAACCTGGGAAATAGAAGTTGTAAAATGCTAAGATCGATGAAAAGGGAGGAAAAGAACTTTGTTGAGGAGAAGGTAATCTTATGGTTTTGATGAAGAGGATGTCGATATTTGCTTTTTGGTAGAACAGAATGGTTAGGTTCATTTTAAGCTCCAAATGACTGATCAATTTTCTTTTCAACATACGTTTGAAGGATTCTGAATGTGGTGTAGAGTATTGTATGGGAGCTAGGGAACAAATCATACTAAACTCTGATTCTATTCAGAATCAGCAAGCTAAGTATGATATATTTATCTCCAATCATATTAATATTTACATAATTATTTAATGTCTTCCTTAATAGTCTATAAGCTTCATGGGAGCAAGACCAGCCGTGTCTTGTTCACAGCTATATTTTCAGCATTTAGTACAGGTCTGGCATATACCAAGTGTTCAATAAATACACGGGTAATGAATAAATGCGTTGTCCAATTTAAATATGTGTGTCTGTTTGTGTATACTTCCTTGTCTGTAAAATGAAAATACTAATAAATAACTGCAAAATGCTTAACAGTACAACCACTTGCCAGATCTCAGCAAAAATGTTACGTCCCTAGAGAGACCTCCTAAAAGGTCCCTTTTCTCCCATTACTCTCTTTGTTTTCTTGCGTAACATCACATTTATTTATTCCCTTGTTTACTATATGTGTCTTTCTATGAGAGCAAGGAGGACCTTGTCTCTTGCATTCCCTCCTGTATCCTCTATGTCTGAAATAATTCATGGCAAGTGATTAATAATTGTTGAATAAATAAATGAATCATGCCAACCTACCAAGAATGAAGCTCAAGACCTTAAGATATTTGTCCAAATTCCTGCCTTTTATTTAATAGAATCAGAAATTGTTTCTAATACTTCACAACCACTTAAAAATACTATTCATTTTTACATCCAAGTAATGAAAGAATCAGGACGTTCCTTTTGGAAGACATAGTTTCAACATTTTATCTAAATTGCAAAATTATACAAAAACTCAAGTGACCATTGATAGGGGACCGGTTTAAGAAATGACAGTGCAGTTCTTCACTAGAATGTCATACAACTGTTAAAAGAAAAAAATCAGAACAGGGCTGAGTGTGGTGGCTCCCACCTGTAATCCTAGTGCTTTGGGAGGCCGTGTGCGTGTTTGTGTATATTTCCTTGTCTGTAAAATGGAAATAATAATAAATAACTGCAAAGTGCTTAGCACAGGAGGATTGCTTGAGGTCAGGAGTTTGAGACCAGCCTGGGCAACATAGTGAGACCCCCATCTCTAAAAAATTTTTTAAAACACTTAGCTGGGTGTGGTGGCACACACCTGTAATTCCAGGTACTCTGGAGGCTGAGGCAGGAGGATCGCTTCATCCCAGAAGTTCAAGCTGCAGTGAGGGGTGGTCGTGCCACTACACTCCAGTCTGGGTGACAGAGTGAGATCCATCCTGTCTTTAGGCAGGGAAAAAAAGGAAAGAATAAATGAATAAATACTTCATTTAAAAAAATAGAATGAAGATCTCTGCGCACTGGTATGGAAAGCCCTTAAAAGGTACATTGTTAAAAATGTTTTTAGTGGGCAGAATAGTGTGTATTCTGTGCTACCTGTTGTGTAAAATTGGTGGAGAAATAAGAATCTATACTCATAATTTGCTTGAATGCACATAAAGAAACCCTGAAAAGATAAGTAGAAATAATAATAGTGGTTTCCTGGGAGTGAGAGCAAAGTGGGCAGCTTTGAGACTAGAGGTGGGAGGCAGATATTTTTTTTTCCCTCTGTACCTTTTACAGTTTTTTTGAGCCATTTGAAGATATTATGCGAAAAAAAATTAAAAACAGAGAGAGACAAGTAGTGTTGATTACTTAACTTCTTTCAGTTGAAGGAAACCTGATGCTAATTCTGTTAAGAGGAGAGCAGCCAAAAGCATAGGTTGTGACTTGCCAGCAAAAAACAGGGACCGGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGGGACCGGTAGTTCCCTCTGTACCCAATCCCCAATGCCAAACAGAATGACATTGTTAGACTTAAGGTCTTAACCTGCAGGGCAACTGGGATTCAGAGTGATTTTAGTTCTGTTCTTAAGAGCAGCCTTTTCTCCTAAAGCCTGCCAAGAAATTTTTGTTAATTCTTCCCAGGAACATAACAGACAAGGCCCCTGCTCTGGTAGAACTTACATCACAGTGCAAAGATCAGCAAACTGTAGCCCATGGGTCAAATCCAGCCCTCTGCCTGTTTTTGTATAGCCTTTGAACCAAGAATGGTTTTTAAATTTTTTAATGGTTGAAAAAATAACTAAAAGAGGAACACTAATTCATGACACATGAAAATTAAATGAAATTCTAGTGTCAGTACCATAAATAAGGTTTTATTAGAACACAGCCATGCCAAAATTTATTTATGTATTGTCAATGGCTGCTCTCTCAATGGCAGAGTTAAATACCTGCAGCAGAGACCATATGGCCCACAAAGCCTCAAATATTTAGTGTCTGGCCCTTCACAGAAAAAGTTTGCTGACCCCTATTCTAGTAGAGAGTAATATGCTTGGCACCATGATAAGCATTTTGCATACAGTATCCCATTCAGTCTTCAGGACAAATCTCTGATGGAGGTTCTATTAGTCGCTCCATTGGTAAAATGTGAAACTGAGGTTCAGAGTGATTAATAATTCAAATAAGGTCATGCAGTTCATAAGAGGCAAAACTGGGAGACCATATCACATGACCATATGACTCAGTAGCCAGTGTATTTAACCATCATGCCATAGACTGGTGCTTTTCACACTTGAATGTACATACCAGTCACCTGGGATCTTGTTAAAATGTCAACATCTACCAATTCAGTAGATCTAGAGTGGGGCCTGAGAATGTGCATTTCTAACAAGCTTCTAGGTGATAAAGATGATGATGGTGGTTCACAAATCACAGCCTCTAAATCAGTGATTCTCAACCATGGCTGCTGCACATTAAAATCTGAGGACATTTTAAAAAATATAAATGGGCCCAGAGCCCACTCTGAAATATTCTGATTTAATTGATCCAAGACCTAGGCATCAGAGTATTTTTTTTTAATGCTTTCTTGGTGATTCAAATGTACAGCTGGACTGCAAACCACTGCTCTATTGAAATCCTGTCGAATGACAGTAAAAACATTTAATCCAAAGACCAGAGTTCTAGTTCTAACTCTGGTATGACAGAATGAAGCAGGCTGTTTCCCCTCTCTGGGTCTCCAGTTTTCTTTGCAGGTGAAAAAGGAAAAAGCTGAAACCAGATGGTGTCAGAGGGCTCAAGATCACTGACTTGTCAGGTCTTCACACACATAAATGGGAAGGACAGAAGTACCCAGGTTTCCTGATGCATCGGTTATATCAACATGATGCCCAAACACCAGGTCTGCTTAGGGTAAAACTGCAATAACTGTAGATGTCAGCTAAACTGTCCATTTAGCTGACATCTGCAATTATGTATTGTTTTGGCAATGTATCAATACAGAAATGCTTCCACATAGCCAGACTGCCTTACATGGCACACAGCTAGAATTGTAGTTAGAATGATGATTTAATGATTATGAGAGTAATATATATTGCATTGTAGGAAATTTGGAAAATTACAGGAAGTATAATGAGGAGAATCTCAAACACTCATAATCCCTAGAACTGTATTTTTAACAGCCTCAACCAAGTAAATGACATTGTGATCAAATGATTTCCCACAGAAGCAGGCGATGGCCCAGAGGGGCCTCCCCGACAAAAGTCCTAAATGTTAAAGCCCCATTATTACATCTCTATTAAATGCAGCTCCAAGCCTGGACTTAAAAGTAGTATGGGCCCCTATTGAGAGCATGGGAACTGCAACCTATCAACTAGACAGTTCATAAACTGTGACAGTGCTTTCATGTCTAATTGTTATTGGGCTACTCTCGATTTCTTCATCTACAGATTATCCACTGTGAAAAATGCTCCTTAACATTTCTACCCTACTTTGAAATCTGCAGGTGAAAGATATTAGACAAGAAGCCTTAGCCCTTTGCTTTCAGTGAGATTAAGTGGGTGACCCAGATCTTTACTTCTTTAGAAATGCATATGGGTGTCAATAGTGCACAGTATTCTGGAGAATGGGCTAGGACCTGATAGTTCTGGGTTCAAATCCAGCCAATGCCTCTTACTAGTCATTTTCTCAATCTGTAAACAGAGATGATAATAGTACCCACTTCACAGGGTTTCTCTGAGGATTTAATAAGAAAGTGTCTATAAAACACTGAGCACTGTGTTTGGAACACAGAGTGTACGCAGCAAATGGTACTATCATGATGATTATCAATACTAATAACAAAACTTAGCCACTTTGGGGTATGGCTACCTTCAGGACAGAAACAAATATATGTCCTTTTTGCTTGTCTTTTAG
Seq C2 exon
ATGAACTGGTCTCTGTGCAAATCCTGAGTGCTAAAGCTTCCAACAAGACTGATGCTAGCTCGTGTCACCAGGAAGATGCTACGTCATGCCAAGTGTTTTCAGCGCCTAGCAATTTTTGGTTCTGTGAGGGCACTGCATAAAGATAATAGAACAGCAACCCCTCAGAATTTCTCCAACTATGAATCCATGAAACAGGACTTCAAACTGGGGATTCCAGAGTATTTCAACTTTGCTAAAGATGTCCTGGACCAATGGACTGATAAGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005187-ACSM3:NM_202000:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.050
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0050123=AMP-binding=PU(0.5=2.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)