HsaINT0003011 @ hg38
Intron Retention
Gene
ENSG00000005187 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr16:20780974-20781787:+
Coord C1 exon
chr16:20780974-20781130
Coord A exon
chr16:20781131-20781707
Coord C2 exon
chr16:20781708-20781787
Length
577 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
3' ss Seq
TTGCTTTTTCTAAATTGCAGACA
3' ss Score
8.85
Exon sequences
Seq C1 exon
GTTCTGGCTAGATTTGACACCCTCAGATGTGATGTGGAATACCTCAGATACGGGCTGGGCAAAGTCTGCATGGAGTAGTGTTTTTTCTCCGTGGATCCAGGGAGCATGTGTATTCACACACCATTTACCCCGTTTTGAGCCGACTTCTATCTTGCAA
Seq A exon
GTAAGCCAAAGCACAAAGAGGTCAATATTTAGAAATGCATTAAGCAGTATGGCTGACAGAACTGGTGAATAAAGCAACTTGCAGAGATCAGAGTAGACAATATGATTTAAGATATGTCACATCCAGAAAGTCAATAAGCCTGAAAAGATACACTCGGCCCCCTCTGTATCCACAGGTTCTGCAGCCTCTGATTCTGCCAGGCACATATTGAAAATATTTGGGGAGAAAAACCAAAAACAAAATACAACAATTAAAAAAATGCAAATAAAAAATACCATGTAACAAATATATACATAGCATTTACATTGTTTTAGGCAGTATAAATAATCTAGAGATGATTTAAAGTATACGGGAGGATATGCATAGGTTATATGCAAATACCATACAATTTTATATAAGGGACTTAAGCATTCCTGGAACCAATCCTGCAGACACTGAGGGATGATTCTACAAGAAAAGGTAAGAATGTATTTACATTAACATAAACAATGTTTAAATTGTGCTGCGTCAACCAAAGACATTTAAGCACTTATTTAAGTTGTAGTAAGACCAAGAGTTTGCTTTTTCTAAATTGCAG
Seq C2 exon
ACACTCTCCAAGTACCCCATCACAGTCTTCTGTTCAGCACCAACTGTATACCGAATGCTTGTACAGAATGATATAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005187:ENST00000289416:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTGGCTAGATTTGACACCCT
R:
TATCATTCTGTACAAGCATTCGGT
Band lengths:
230-807
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development