HsaINT0003032 @ hg38
Intron Retention
Gene
ENSG00000183549 | ACSM5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:HGNC Symbol;Acc:HGNC:26060]
Coordinates
chr16:20419228-20421401:+
Coord C1 exon
chr16:20419228-20419435
Coord A exon
chr16:20419436-20421257
Coord C2 exon
chr16:20421258-20421401
Length
1822 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAAT
5' ss Score
4.89
3' ss Seq
AGTGTATTTACGTTTTACAGGGA
3' ss Score
6.03
Exon sequences
Seq C1 exon
GGACTGTGATGATTCCGGGTGTGACTCAGCTGACAGAGAAGGACCTCAAGTACCGGCTGCAGGCGTCCAGGGCCAAGTCCATTATCACCAGTGACTCCCTAGCTCCAAGGGTGGATGCCATCAGTGCCGAATGCCCCTCCCTCCAGACCAAGCTGCTGGTGTCAGACAGCAGTCGGCCAGGCTGGTTGAACTTCAGGGAACTCCTCCG
Seq A exon
GTGAATTGGGGCTCTCCAGAACAGCAGAAAAATGAAGTCATTTCCCCTTTAAGCAACAAAAGATGAAATGCATTGCTGATTCCACACATAGAGAGCGAATCAGAGAGGAGCACTCCCATTGGCAGCCAGGCTGACCTGAGCATAATCCTGGTCCCTACCTTAATGTTCAAGGTCCCTCATTCAGTCAGTGCTGGATTTGTCAGCAGCTTTTCTGTGCTTCATTTGCTTCTATAATGCGGTGGTAGTTATTAGAGCTACCATTCAGAGTACATGAAATAACCAATATGGTGCATTTAGCACATAGCAGGTGGTCAGTTAATAATAAACTAGTGGCCATGTATTGGGTACTTAGTGTATCGCTAGATACTGTGCTATGTAAGCCTTCACCTTCATTCATTCATGCAGCGAAGATTTAATGAACATCTATTTCACGACAAGCATTGTGTTTGGTGTTCAGAACACCATAATGGATCAAACATCACCTTATTTAATCCCTGAACAGGACATTGTGATGGGCCCTTTAACCCAGTTTTACAGATGAGGAAACTGAGACTTGGAAAACTAAAGTGACTTGCCCAAGGTGCTAAAAAGTAGTCAAGTCAGGAGTGGGCAGAGCCGAGAGCAGATGTGCCTTGGAGCAAGGGCCTGGTGGAAACCCATCTCAGAATTTGAGACTTTGTCCTGATTGGAAGCCAGAACCCAAAAGGAGCCTCTCAGGGGCCTGAACCATTGAGTTATGAATGCTCACCCCACAGACCAGCTGCATCAGATTCACCTGGCTGCTGTTTTGAATACAGATGACAAGGCCTCACATCTGACCTACTTAACCAGACACAGCTGAGCAAGAGCCCTGGGGATCTTTTTTAAAAAAATCAGCCCATAGGGCCAGGCGCCATGGCTCACGCCTGTAATCCCAGCACTTTTGGAGGCTGAGGCAGGCAGATCACCCGAGGTCGGGAGTTTGAGACCAGCCTGACCAGCATGGAGAAACCCCGTCTCTACTAAAAATACAAAATTAGCTGGGCGTGGTGGCGCACGCCTATATTCCCAGCTATTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCCAAGATCCCGCCATTGCACTCCAGCCTGGGCAACAAAAGCGAAACACCATCTCAAAAACAAAACAAAAAAAAATCGGCTCATATGATTTTGAGAGCTGTCAGGTGGGCCTAGATCAGTGGTTCTCAATTTTGGCTGTTACTAGAATTACTGAGAAGCATTTAAGAAAACATTAAAGATTCTGATTTTATTTTGTTCAGGGTGGATACAGACAAGTTTCTTCCAAAAATTTACCAGGGGACTTCACAGTGCAGCCAGGGATGAGAGCCCGTGGATTAGCTGATCATCCAGATCACAGAACTTTGGGAATTACCTAGATCTCAAAACCCCATATTGGGGGAAACCTTTAGAAAAGAGTTCTAAATTATTAGAAATTGGGATGGGGGTGGAAGCTGTGCCTAAATGTGCAGAATTATAGACATGGACATGTGTGTGTTCTACCAGAAAGTCCTCATACCTTGGTAAGAAAGCATGGACTCTTTTGCGTGAATTATTTATCTATTTTGAGCCTCAGTTTCCTGGTCTGCAAAAGGGTTATAATGATAGTACCTACCCCATGAGGTGGTTGCAGATTACCCAAGCCAGAGCTTTCAGCACAGCACCTCACATGTGGTATTTATGAAACGGTAGTCATATTGTTGTTACACATATTATTGGTGCTACTAACTGTTTTTACCGTGGTAGTGCCACCTAGTGTATTTACGTTTTACAG
Seq C2 exon
GGAGGCTTCTACAGAGCACAACTGCATGAGGACAAAGAGTCGAGACCCGCTGGCCATCTACTTTACCAGCGGAACCACCGGGGCCCCCAAGATGGTCGAGCACTCCCAGAGCAGCTACGGACTGGGTTTTGTGGCCAGCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183549:ENST00000331849:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(47.1=93.0)
A:
NA
C2:
PF0050123=AMP-binding=FE(11.6=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTGTGATGATTCCGGGTG
R:
CCACAAAACCCAGTCCGTAGC
Band lengths:
342-2164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development