HsaINT0008797 @ hg19
Intron Retention
Gene
ENSG00000224309 | ANKRD30B
Description
ankyrin repeat domain 30B pseudogene 2 [Source:HGNC Symbol;Acc:16620]
Coordinates
chr18:14752565-14753011:+
Coord C1 exon
chr18:14752565-14752679
Coord A exon
chr18:14752680-14752837
Coord C2 exon
chr18:14752838-14753011
Length
158 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TCTTGCTTTAATACTGACAGGCT
3' ss Score
5.17
Exon sequences
Seq C1 exon
GACTGCTCTACACTGGGCCTGTGTCAATGGCCATGCAGAAGTAGTAACATTTCTGGTAGACAGAAAGTGCCAGCTTAATGTCCTTGATGGCGAAGGGAGGACACCTCTGATGAAG
Seq A exon
GTAAATAGTAGCCAGTTTTTTCAGCGGGAGATGGATTTGGTTTAAATACATAGAATAAAAATGAATTTAGTTGAAATACAACTAGTTTGTGAAACCTGTGGAATACTTATTTTGATTTCCTATAATTTATAATGTACTTCTTGCTTTAATACTGACAG
Seq C2 exon
GCTCTACAATGCGAGAGGGAGGCTTGTGCAAATATTCTCATAGATGCTGGTGCTGATCTAAATTATGTAGATGTGTATGGCAACACGGCTCTCCATTATGCCGTTTATAGTGAGAATTTGTTAATGGTGGCAACACTGCTGTCCTATGGTGCAGTCATCGAGGTGCAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000224309-ANKRD30B:NM_001145029:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTCAATGGCCATGCAGAA
R:
CTGCACCATAGGACAGCAGTG
Band lengths:
250-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)