HsaINT0008884 @ hg19
Intron Retention
Gene
ENSG00000167612 | ANKRD33
Description
ankyrin repeat domain 33 [Source:HGNC Symbol;Acc:13788]
Coordinates
chr12:52284368-52285505:+
Coord C1 exon
chr12:52284368-52284769
Coord A exon
chr12:52284770-52284969
Coord C2 exon
chr12:52284970-52285505
Length
200 bp
Sequences
Splice sites
5' ss Seq
TAGGTACTG
5' ss Score
5.9
3' ss Seq
CATCCTCATCCTCCCACCAGTGC
3' ss Score
9.53
Exon sequences
Seq C1 exon
GTGCTGACCTGACAGCAGTGGACCCTGTTCGGGGCAAGACGGCCCTGGAATGGGCAGTGCTGACCGACAGCTTCGACACCGTGTGGAGGATTCGGCAGCTGCTGAGGCGGCCCCAAGTGGAGCAGCTTAGCCAGCACTACAAGCCCGAGTGGCCGGCCTTGTCCGGGCTCGTGGCCCAGGCCCAGGCCCAGGCCCAGGTTGCCCCTTCACTCCTAGAACGGCTGCAGGCTACCTTGAGCCTCCCCTTTGCCCCGTCTCCTCAGGAGGGGGGTGTTCTGGACCACCTTGTGACTGCCACAACCAGCCTGGCCAGTCCCTTCGTCACCACTGCCTGCCACACTCTGTGCCCTGACCATCCACCTTCGCTGGGCACCCGAAGCAAGTCCGTGCCAGAGCTGTTAG
Seq A exon
GTACTGCCCCGCCCCCTCCCCTGGTTCCCCAGTCCCCGCCAGGGAGTCCCCAGAGGTCCCCGTGGGTCTTCGTCCCCTACCAGAGCCCTCAGGGCATATTGAGCAAGTGCCTTCAGTGGCTACAACCCAGGGATAGCACCAGCCCCAGGCCCCAAGTCCCCAAGATCCTCCTCTCCAAGGCATCCTCATCCTCCCACCAG
Seq C2 exon
TGCCAGCCGAAGCCCAGTCCTTCAGGACACCAAAGTCTGGCCCTTCCTCTCTGGCGATACCAGGAGCTCAGGATAGAGAAGAGGAAACAGGAGGAGGAGGCCAGAATGGCACAGAAGTAGGGGAAGATGGGATAGGACAGGCTGGGAACAGGTAATCAGGCCCCTCCCAGGGCTTCTTTCCCCTCTGGAGTGCCTCCGGCCTCCCCATCCACCTCTGCCTAAGTAAATCTGCTCTCAACCTATATATATACAAGGTCATTCATTCTAGCATTGTTTGCAAGAGTGAAAGAGTGGAAACACCCGAAGTGTCCATCAGTAAGGGACAGGCTAGATTGATTACGGATGTAATTGCTGTCCATCCATACAGAGCATACTCTACAGTGTATTCTAAAATAAGACTAAGGAAGCTGTTTATATTCTGATATGAAACTACCATCAAGATGTATAAAGTAAAAATAACTAAGGAGTGGAACAGTGTATATGGCATATTATTATTTGTCGAAGTAAAATTTTCACGAAGATAAACATGACTAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167612-ANKRD33:NM_001130015:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.287 A=NA C2=0.631
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(53.9=30.4)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTTCTGGACCACCTTGTG
R:
GCCTGATTACCTGTTCCCAGC
Band lengths:
294-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)