HsaINT0012413 @ hg38
Intron Retention
Gene
ENSG00000165997 | ARL5B
Description
ADP ribosylation factor like GTPase 5B [Source:HGNC Symbol;Acc:HGNC:23052]
Coordinates
chr10:18659405-18666635:+
Coord C1 exon
chr10:18659405-18659683
Coord A exon
chr10:18659684-18666574
Coord C2 exon
chr10:18666575-18666635
Length
6891 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
GATTTGCTTTCTTTTTGTAGAAC
3' ss Score
8.84
Exon sequences
Seq C1 exon
GGGGACTACGGGTCGGCGTTGGGCTCAGTGGGCTCGAAACAAAGGGCTGTCCGGTGGGGATTCGTCGCGGCGCCTTCTGAGTGGTCGGGTCGAGGCTTCTCGGCCTAGCAGTGCCCTCGCTGCGCGATCTCAGGCGGGTTCTCCTCGGCTCCGCGCAGCCCGCGCCGCGGTGGGGGACCCGGCGCAGCGGCACCTGCTGCCGAGGGACCCCGCGGCCCGCCCCGGTGCTCGTGATGGGGCTGATCTTCGCCAAACTGTGGAGCCTCTTCTGTAACCAAG
Seq A exon
GTGAGAAGAATGGAGCTGCGCGGCGGCTCGAATCCGAGGCAGAGGGTCCCGCCGCCGATGGGGACACCGGAGACAGGGGACAGAGCGTTCGGAGACGCGGAGGAGGAAGGGACTTAGGCCAGGGGGCGGGCAGAAACTCAGTGTTTTAGACCTGGAGGACGTACAGGAGAGACCTGACGTGTGGGAGAAATAGGGAGGCAGAAGAGAAGGTATTTGGCGTCCCAGAATCCAAACTGAGAATGTTTGGATATTGGCGAAGTAAAGCGGGATACAGCTAATGATGCCAGGAGGCGTATGGAGGGCCTTTCTCGTCTTTATTGAAGCGTGCTTGTGTCTATGTGTATCCCCAGGATAAGTGTCCGCCCAGAAACCTAGAACTTTTTTTTTTTTGAGTAATGTAGGTGCTTTGTTTTCCCGCCCTGCAGTTTGAGCCGTAAGCCAGTGCACTTTCACTCTGATTTCGCCTCCTTTCCTCTAGGACTTGGGAATGAGTTGTCCTATTCAGATGCACGAGTTTTCCAGCATCTTCATTGTAAACTTTTTTTTTTAAAGCATTTAGTTCAGAAACTAAATGCTTTTCGGTTTTGTGTAAGACGTTACGTGTCCGTAATTAGTCTGTAACAGGTAATGAGACACCTGGAAGTGGCAGGTCCAAAGGGCCGAGAAGTTGCAAAACCTGTTCTGAATCAGAATGAGATGTGATGTCTTCTGAAGAGAGAAAACACCCAGACCAAAAAAGGGGCCGACGATAAGTTAAAGTTTGAGGCGTCCTTTGAACAGAATGGTTTCTTAGTAATTGAAACCAGTTTTGAAAATCAACTCGTTTCATTTTACATTTAAGAGCCGGGCATCGTTAATAAGCCAGTTTTATTTCCTTTTATGTTGGTACCAATTTGTTACTGCTAATGTAGGTATCTAATCTTTTTCTGGATTTAAGAAGTTGTGGAGGTAATGGAATGGCTTTAGTTGACTTGTTCTGTAGATTGATAAGAACACTAAAGCAGTCTTTTTCAAGGTTATAAATATAGATACAGGCACACACATGTGTATATATATGTATATGCCTGTATCCAGTAACCACAGATAATATTACTTATCAAATGATTTCAAAGTGAGCAGAGCTTCACACTTTGTGGGTATTATCCATACATTTAAAATATTATTTTTATTTATTTATTTTTTGAGGCAGAGTCTTTCTCTGTCGCCCAGGCTTCAGTGCAGTGGCGCAATCTCAGCTCACTGCAACCTCTGCATCCTGGGTTCAAGCGATTCTTGTTCCTCAGCCTCCCGAGTAACTGGTATTTACAGGCACCCGCCACCACGCCCGGCCTATTTTTGTATCTTTAGTAGAGACAGGGTTTCGCCATGTTGGGCAGGCTGGTCTCGACCTTCTGACTTCAGGTGATCTACCCACCTCGGCCTCCCAAAGTGCTGGAATTACAGGTGTGAGCCACCGCGCCCAGCGGTAAAACAGCATTTTAAGACATGCTTAAAGGTATAAAGATTAATACAAAAATCACCAGTTTTCTCTTTCCCCTGAGCTGGAGAATCGAAACGTTACCGAAGTAGTTGGTTTTCCCTTTATATCCTTTCCCGTTTTCCTTTCTCCCTTTTCTGTTACATGGCTGCTGTCTTGTCTTTTTTCGTTGGAGGTGTCCTTACTCAGACTAGAGGTAATAAAAGATGTAAGGGGAAAATGTAGATGGTGATGAAAGACATCCAGTGGCTACTTTTATACTCGCATAATTGTTCAGGCCTCCTGAATCTCCATTTCTACTTAGAATTTTTCTCTTCCTCTAACTTTCCTGTTGGAAAATTTAGAACCAGTGATTATTCTGTTATTTTATTCTTATTCATTCATACAGCCATAGGCCAGTCTTCAGAGTTTAGCATAGGAGATACAAAATTAAAGAATAAAGATACCTTACTTCTTGGCAAAGTATTCAAACATCAATAAACGAGACAAACATGAAAAAAAATGCAGTGTGGTAAATTATTTAACAGATATGTGTAAAAATATAACGTTGGCTGCAGCACAAGGTATACTTGGACGTAATGTAATGATGAGTAGGAATTTGGGTGGCATGCTAGACAGACCGAATAGAAGGGACGTGTTATTCTAGGCAGAAGAGCTAATATGCAAAAGGGAGAGGAATGAGCTAGTTTGGTACTTTTAGGGAAGCTGAAAATAGTTGAGCTTGGCTGTGTGTTAGTTTGCTTGCGAGGAGTGAAGAGGAGATGAGATTGGAAAGACAACCAGGAGAACCTTATCACAGAGGGCCTCCAGTGTTGACTAAGACATTAAACTCTCTAGAGCAAGGAATGGGACTCACTGAAGGGTTTAATCCACAGATGTATCTTAGCCTATATTTTTGTTTTCTGCATCAACAAAATTAACTACCAATCTCAGCATTTTCCATTTTTGTAACTATATTTATCTATTCCAGTGGAATTAGATATATTAGAATAACAGGCCCAAAGCGCCACCTCACACCAACTAAATTAGATTGGGGTGAAGAGGCCTGGGCATCACTGCCAAGGTAAATCGAATGTGCAGCCAGTGTTAAGAACTACTGATCTTACTTTATGTGCTCCTTTCCCGTGTCTTTCTTCCAGTATTTCCACATTCTCATCCTTTTTTTTCCTGTAGCATTTTAGAGTCTCATGCGTCTTATAAATTAGATACCTTTCTGTGAATAAGTATACTAAAGCGTGTGTTGTCTAAGTAAAGCAATGTAAAAGTTAATTCCTGCAATTTTGTATTGTTTGAACTGGAAGCCTGTTTACTTCGACAGTTATTATTCAAGGAAATAATTTGGAATTCTGATTATCTCTGCAAACATTTTATATGTTAATGTAGTTCTGTGAAATACATATGTGTTATGTGTGTTTGATAGCTCACCTCTAAAGTTTTGCATTGTTTTTTAAATTTCTTTTGAACTTTTGTAGGCATAGTCTTTTTCTCTCAGTGTTATGATTGTGGAAACCTGTCATCAGTTATTTCTTTTTTTGTTGTTTGTTTGTTTTTTTTTTTTAATGAGATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGTGCGATCTCGGTCCACTGCAACCTCCATCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGTTGGGATTACAGGCGCACACCACCACTCCGGCTAATTTTTGTATTTTTAGTAGAGGTGGGGTTTCACCATGTTGGTCAGGCTGGTTTTGAACTCCTGACCTCAGGTAATCCGCCCGCCTTGGCCTCCCAAAGTGCTAGGATTACAGACGTGAACCACTATGCCTGGCCCAGTGATGTCTTTAAATTTTATTTATTATTGTTATATTTTCTGTCACCCAGGCTGGAGTGTAGTCCTGTGATCTCAGCTCACTGCCACCTTTGCCTCCCAAGTTCAAGCAATTCTCCTGCCCCACCCTCTGGAGTAGATGGGATTACAAGCACCTGCCACCATGCCTGGCTAATTTTCGTATTTGTAGTAGAGATGGATTTTACCATGTTGGCTAGGCTGGCCTCGAACTCCTGACCTCAGGTGATCTACTCGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCACCTGGCCAGTTATTTCTAGTGTTACCCAGAATTAAGAACAAATGAAATACAGTTTTAATTGTAGTTCTTTTTCAGAACCATGTAACAGTAACATCTTAATTTCATAATTTAATCATTTCTTTCCAATCCATGAATTTCATGTTATCATTTTGAACACTGGTTGCCAATTGCGTATGATTATTGTCCTTTACTTCTGACTGCTCAGATCTCAGATCTTGTGGCTCACATTTCTCTCTTTAGCTTATTCTGCTCTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCTCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTTATCTCGGCTCACTGCAAGCTCTGCCTCCCGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGTGTCTGCCACCACGCCCGGCTGATTTTCTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCTAGGATGGTCTCGATCTCCTGACCTTGTGATCCTCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCTACTGCGCCCGGCCCCAGCTTATTCTGCTCTTAACTCTGGACTGTAAGCAGGTTTCAAACACACTAAACTTAAACTTATCATCTATCTGCATCCTGTCTTCCAGACCATTCTTTGTTTTTGTTTTGTTTTGTTTTGTTTGAGACGGAGTGTTGCTCTGTCACCAGGCTGGAGTGCAGTGGTGCAATCTCAGCTCACTGCCACCTCTGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAACTAGGACTATAGGCACCTGCCACCATGCCCGGCTAAGTTTTGTATTTTTAGTAGAGACGGAGTTTCACCAAATTAGCCAGGTTGGTCTTGAACTCCTGACCTTGTGGTCTGCCCACCTCAGCCTACTGAAGTGCTGGGATTACAGGTGTGAGCCACCATGCCTGACCTGGCTAACTTTTTTCTTAAGAGATGGGATATTACTGTATTGCCCAGTTTGGTCTCAAACTCCTAGATTTAACTGATCACTTCTCCTTGGCCTCCCAAAGTGTTGGAATTACAGGTGTGAGTCATTGCACCTGGCCTAAAACATTCTGATTTACTGTAACTGATAGTAACAGTAGTGTCTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGCACAGTGACCCGATCTCGGCTCACCGCAAGCTCCGTCTTCCGGGTTCATGCCATTCTTCTGCTTCAACCTCCCAAGTAGCTGGGACTACAGGCACCCGCCACCATGCCCGGCTAATTTTTTTGTATTTTTTGTAGAGACAGGGTTTCACCGTGTTAGCCAGGATGGTCTTGATCTCCTGACCTCGTGATCCTCCCACCTCGGCCTCCCAAAGTGCTAAGATTACAGGCGTAAGGCACCACGCCTGGCCTAACAGTAGTGTCTTAACCTAACATTTCCTCATGTTAGGGACCTACCTTTCAAAATGGTGCATTATTGGTGAGTTTTACCATCACAGGCCTTCAGTATTATGTGAAGCATCATAGTGCAAAAGTGAAGCAAGGAGCAGGATTGTTTGCAAATGACCTGGGTCTTCATTTGAGTTGCTTCAAGAAGGAGCCATCTGGTACTGTCCTTCCATTCCTTTCTCCCAACAGGATTATCTGCCTTCAAGTTTTGCTTATCTTTAAACTAGTGGCTTCCTTCTCACCACTGCAGGCATGTTGTTTTCTGTAGATGCTTGGTAGGTGGAGCTTCTAGCTGTCACCAAAATTTAGAATGCTTAGTGCCAGGCAGTCTGTTTGTTCCTCACTGATAAAGGTTCTTGTACTTTAAGGGATAACAAACAGGGTAATACTTAAAGATTAGCTTCATTAGAGGACATGTAGCCAAGCTTGGTGGTGTGCACCTGTGGTCCCAGCTATTCAGGAGGTTCAGGTAGGAGGATCACTTGAGCCTGGGAGGTCGAGGCTGCAGTGATCATGCCCCTGCACTCCAGCCTGGGCAACAAAGCAAGACCCTGTCTCAAATAAATAAGGAGAATTATAGTGAGTTATACTAAGCAGGCAAGTTTTGTTTTGTTTTACAAAGCAGCTTCTACCATAGTGAAAATAGCCCTTCCAGAGGACCGTGTCTGTTTATCCTGCACTGTAATAGGCTGTATCTAGAGTGTGTAGGTCATTGGAAGACCTGCACATCTCAAGAACTTAAATTTTCTTGGTCCCTCTTTTTTTGGCTGATGAAGTTTAGAACTTCAGAGTAGGAATATGAGCTGATAGTTGATTATATGACCAGAATGTTGACATTCACCAGAGGTCATCAAGAAGAGCGGGATTCTGATATGAGATGTGCCCAATCGTTGCCTACAAATCAACTGTGTTGTGATTCTGTGGAAACTTCCCTACTTACCCTGTTGATGTTAACTTGTAACTTTTTAAGCATTCTTCTGCCTTGGAGAAGGGGATCTTTAGTATACTTGGCATAAGTGAAAATCTAGGAAAGATGGTATCTGGGTTGTTTTCTGTATTCAAAGGACATTGCAGAATATATACCACTTAACGGAATAATTAGATGAGCTTTAGCAACTACTTATTAAAAGAGGTGAATATTTAGTGCATGGCACCCAAAGGAGGAAAGAACTGAAGAGATTTTCATTGTACAAAGAGCAGAAACAGAATCTGCTCAAAAGAACTGTAGAAGCCGGTTGAAAAAATGTTAAACAATGAGTAATTGTGTAAAAACTTGAGAGTATATGTTTGTCTTTGTGACACATGAAACGTTTCAATTTTAAGCTTACATGGGATTTTTAAGTGAGAGGAAGAAACAGATCCTGGTATACATAGGTGGGGAAACTTACAGATATGAAAACATTTTGATAAAAAGCTAACTTGATTGGTACAGAGCTAAAAAGGTGTGTAAAACAGGCTTTTTAAAAAACTTACATTTAGGTTATAATTTTTGCCTAGATTAATATTTGGGTCTCCTCTCCCCTAGATGCAATATAAGTGACCAACTTTGCTGGTGTTTCCTGCCTACCCATCTCCCACATTCTTTTACATGAGAACTAGACAGAGAATCAATGATAATTGATTTTGTTACTTAACCTAGGTAGCCTTAACATCATAACATTTCTTTCTGCATTTTAAGTCTAGTGATAGATATTCAGTGAATGATTCTCATTAATGAGCTAACTAATAATCATTGTTGAAAGCATGTAATTGCAGTAATGCAGTAGTGTTAAATGTTTATGATTTGCTTTCTTTTTGTAG
Seq C2 exon
AACACAAAGTAATTATAGTGGGACTGGATAATGCAGGGAAAACCACCATTCTTTACCAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165997:ENST00000377275:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=PU(8.5=93.8),PF128032=G-7-MTase=PU(19.7=75.0)
A:
NA
C2:
PF0002516=Arf=FE(11.4=100),PF128032=G-7-MTase=FE(32.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development