HsaINT0014161 @ hg19
Intron Retention
Gene
ENSG00000198513 | ATL1
Description
atlastin GTPase 1 [Source:HGNC Symbol;Acc:11231]
Coordinates
chr14:51095224-51099784:+
Coord C1 exon
chr14:51095224-51095227
Coord A exon
chr14:51095228-51098944
Coord C2 exon
chr14:51098945-51099784
Length
3717 bp
Sequences
Splice sites
5' ss Seq
ATGTCATCC
5' ss Score
-13.31
3' ss Seq
AATTTTGATGCTTTTATTCTAGG
3' ss Score
-13.68
Exon sequences
Seq C1 exon
AATG
Seq A exon
TCATCCATGTGCCAGCCACTGCATTAGATGTTGGAAATACAGATCAACAGGAATTGGGCCCCAGTCATCAAGAATGTTATGACCTGCCCAGATACAAGCAACTAACTATATAATACTGTGTAAAATGTGAAGTCCTACACAACTATTTTCCAGTTAACATTTCAGCATTTAAAAAAATATACATCAGTTTAGTAGTATATATACTTTTTTTTCTTTTTTTGGGTAGGGGGGCAGTCTTGCTCTGTCATCTAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCACTGCAACCTCCGCCTCCCAGGCTCAAGCAATTCTTGTGCCTCAGCCTCTCGAGTAGATGGGACTACAGGTGCATACCACCATCCCCAGCTAAGTTTTTGTATTTTTTGTAGAAACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGCAATCTGCGCGCCTCAGCCTTCCAAAGCGTTGGGATTATAGGCGTGAGCCACCCAGCCTACTTTTTATTATTCTAAAAATGTTATATCTATTAAAAGTTGTAAGAGACAACAGCTTTTATTTAGCTAATTATGACTTGTGTTAACATTATCTCATATTTACAACCTATGATTTGATTAGCATTAGCTTTGTTAGGAGCTATCTGAACCACTATCATAAGTTGTCATATCATTCTCTTTTTTAGTTAAAAACTTCCAAAAGCAGTATCAGATTACTTCAGATTGTCTCTGTACCTGTAGGCAGCAGGTAATAGCTACAATTCTTCCAGCATTAAGAACATACTTATGGCCAGGTGCGGTGGCTCACGCCTGTAATCTCAGCACTTTCCGAGGCCAAAGTGGGCGGATCATCTGAGGTCGGGAGTTTGAGACCAGCCTGGCCAACATGGAGAAACCCCGTCTCTACTAAAAATACAAAAATAGCCAGTCATAGTGGCGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGAAGGCGGAGGTTGCACTGAGCCGAGATGGCACCACAGCACTCCAGCCTGGGCAACAAGAGTGAAGCTCCATCTCCCAAAAAAAAAAAAAAAAACCCTACTTATATATACTTTATAACATAATTGTAACGTGCCTTTGAAGGATCTAGCTGAGATAAACTAGTGGTAGCACAATGGGAAATGAATGAAGTAAAAACTGGATCCTCTGAGCCACTTTCTGAAATAGTCCCTCAACCACAAAAGATTTAAGAGGGGTTGAGGTCAATGTCAAAACCCTCCTAGACTTATGTTATGCTAAAACCTATGAGGAATACAGAATTGAGTTCTTCAAAGATTCTGATAAAATATGTAATCTAAACTGAAAAATCTGCAGGAGTATCTGTTCTGAAATGCTCACAAATTAATATTGTAAGCAAAGTTGATTATAATGCTGTTAATAAAGCAGGATATATACTTTTCTTTTTTCTTTTTAATCTGCCTTTGCCACAGGGAAGTACAAATGAGGTAAGTTAAATTTTTTAAAATTCAGAGCTATGTATGTGTAAACATTATGATATTATTTTATAAACTGACTAAGCCATTAAAAGATGTCTTTATGTAGATTAGAACAATCTTTGGTGACTTCTAACATTTAAATTTGTAATTGTGAATTTTTAACATGGTCTTAAAATATTTAACTTTTTCTAGACATCATGTATGATTTGATCTACACACACACAAAAACTAAGAATTGAATATCATCAGTATTTGTTTCATGAATGTGTAGAAAACTTCAAAATTCTTAAGCTCTGAAATGGTGGACTCTGCTGTACTGCAGAGTAAAGCAAGCAGTTATGAAACCTGAGGAAATGTAACTACTGGAGGGTATTTATTTAAATGTAGCTACAACCTTTAGAAGTTGTTTTCAACTTTGGCTTTTGACTGACAGTAATACATACCACTTTAAGCAGGGCCCAGGCCAGTATGTATTCTTTCTTGGCAGACCTCAGGCCTGACCTGTAAATTAGTGTTCATTTCTCCTACCGCACATGTGCAACACTACATATCTCAGAAAAGACTCTAGGCATCCACGAAGGAATCATCTGTTACACTAAGAAAAATTACCACTCTGGAATCATTTAGGTCATTATCTTCAGGAAGCAAAGCTGATCTTGAACAACTATAGAGATAATTCTTTCCTCAGTTTCTACTGTGGCATATAATTGGATTATGTCCTCGAATCAAATACCATTTACTATTTACAAGTCAATAAGAAGTTATTTTATGCAAAATTCAGTAAGCAAGTTCATTAAAAAAGCAAAAGCAAATTTCAGCTTTGTAAATCAAAGCTTAAGAAAAAATATAAGAGAATTAGAATTAAATTGAATGCCTTAGAATCAGAATATAATGGAAAACAATACTATGTTGCACCAATATACATTCACAGATCTGAAGATGGTACCATACAGACGTAATGCCATAAGAAAATCAAGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGACTGAGGTGGGCGGATCACGTTAGGTCAGGAGTTCGAGACCAGCCTGGCTAACATGGTGAGGCCCCATCTCTACTAAAAATACAAAAAATTAGCCAGGTGTGGTGGCAGGCACCTGTAGTCCCAGCCACTGGGGAGGCTGAGGCAAGAGAATAGCTTGAACCTGGGAGGAGGTTGCAGTGAGCCAAGATCGTGCCACCACTGCATTCCAGCCTGAGCGAGAGAGTGAGATTCCAACTCAAAAAGTAAAAAACAAAAACAAAAACAAAAAAAAACCAGATCCAAAGAAAGTAGGTATAGACTCACAAATGATAAAAATTAATGGAATTTCCTGGGAACAGATTACTATTTAAAGGATCTCAAGCTTTTATGCAGCTTTTAAAAATATTCAAAGACTCTTTACGAACTCCAGAACTAAATCAGACAAGTCATTTGTAACTGACTGTCAAGTATGTGAAAGTCAGAGGAGGGGATGAAATCTTAGACACTAGCTAACGGGGCCAGGAAACAAAGATATCTATGAACACTTATATAAAGCAATATACAATACACAGAGATTCCTATGATTCAAACATCATTAAAAACCCACAGAGAACAATAAGAGGTAGTTTTAAATGAGGAAAGCTTGCTGAGGTAATGTTTTTGAATAAGGTTTGTAAGATATTAGCTAAGTCACGGAAACAAGGCAAGAGCGTGTAAAGTGAAGGATCCTACTGTGCTGGGGGAAGGACACCATATGTGCTTAGCTGCATGACTGTATCAGTAAATGATGGAGAATAAAATTGGCCCCACTCAGGAAAACACTGGAAGCCCAGAAAGCAAGTAGCCTAGCTATGCATAATAGTTACTGCCAATCAGAAGTTATGAGGTCTTACAATTCATCTAAAACTGCTAATATTCACAATTTGAATTTTCAGCACACCCCTGGGGCAAAGTAGAAGCTCACTGCTCCAAGAGGTATGCAAGGTAAAAGGAAACACAGTTTGAGAATAAAACATTCACCACACAGGTCAACACACAAAAGTGTTAATGCACACATTGAGGAGTTGAAAATACTTTTGAATTTTAAGATAATAATTTATATATCGATTAAAAAAGATTTCAAATTCAACATGCTAAATTTTATACAGTACGATAAACTAAAAAGGAAAAAATTTTACATCTGTGTGTTTAATAAAATGTTTTATAATTTTGATGCTTTTATTCT
Seq C2 exon
AGGCTTTGTACAAGCTTTACAGTGCAGCAGCAACCCACAGACATCTGTATCATCAAGCTTTCCCTACACCAAAGTCGGAATCTACTGAACAATCAGAAAAGAAAAAAATGTAATGCAAATTTTAAGAAATACAGGTGCATGACCAATTGTCAATTAAATATTCAGTTTTATGTCTCCATGCAAACATTCAAAGTGCTTCCATCAGAACGGAGTAAAATACTAAACACCTCTGAAGACTGCAAACTGGATTAGTTCTTTTACTTCAGTGTTTAATAAGCAGATGTATGTATGCATGGTTATACTATTTTGTTAACATGTACAATTTCCTGATTTTTCTTCAAAAATGCTGTTATAAAGTATTTGTCTATTTATGATAACAGTACACGTGTTCTGCTTGAATTTACTAAATTCTACTACTGGGTTATAATTAAATCATGTGATATTCCACGTTTGGATATGCTCATTTAATTTCTACAGAAAAAATTTTAAATTATTTCACATTAGCCATTTGTTAAAACACAGCATCATAACTCAGCAGGCTGGATTTAATCTGTATCATCTTATATATATCACAATCTTATTTTTAAGCACATTTTAGAGTTCCTTAGTTGCTTTATCAAAAACCAGATATTGCTTTTACATGGTTTAATAGAATATAAACCTCTTGATAAAAAATGCACAAAAAATCACTTTGTATATGTGAGTTTCACTGCATTGTATATTTTTTCATTTGGTACACAAAGAATGTATTCTTCATAGGTTTATTCTTTTAATATGTGAACTATTATTAAAGTTTACTCTGGTTCCTAAGATTAAAAACAAATGCTTACTGAATTTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198513-ATL1:NM_015915:13
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)