HsaINT0014167 @ hg38
Intron Retention
Gene
ENSG00000198513 | ATL1
Description
atlastin GTPase 1 [Source:HGNC Symbol;Acc:HGNC:11231]
Coordinates
chr14:50593846-50595632:+
Coord C1 exon
chr14:50593846-50593896
Coord A exon
chr14:50593897-50595575
Coord C2 exon
chr14:50595576-50595632
Length
1679 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
GTGTGTAATTTTTTTTCTAGCTT
3' ss Score
7.84
Exon sequences
Seq C1 exon
GTATATAACTTATCCCAAAATGTCCAGGAGGATGATCTTCAGCACCTCCAG
Seq A exon
GTAACAATATTTATTTTCTTTTTTGTGTATCTGGTAGTCTTTGAAACATGTATAGCAGAACTTTGGGGAATGATTTCAAAACATAATCAGATTCTGATTCTGCTGTTTAAACAGGAACTATTGGCCCAATTAGCTGCCTGGTAATTACTGCCTGAGACTGGTTAATTTATAAAGGAAAGAGGTTTAATTGACTCACAGTTCAGCATGGCTGGAAAGGCCTCAGGAAATTTACAGTCATGGCCGAAGGCAAAGGGGAAGAAGGCACCTTCTTCACAAGGCAGCAGGAAGGAGAAATGCCAAGCGAAGTGGGAGGAGCCCCTTATAAAACCATCAGATCTGTGAGAACTCACTCACTATGGCGAGAACAGCGAGAACAGAGAACAGCGTGGGGGAAACAGCCTCCATGATTCAATTACCTTCACCTGGTCTCTCCCTTGACACGTGGGGATTATGGGGATTACAATTTAAGATGAGATTTGGGCGGGGACACAAAGCCTAACCATATCAATAAGTAACTACCTTTCTCCCTAATTTAACATCAAATTTAATATATTTTTTAGAAAAAGAGCCACATTGCAAGTCACAGACATTTAAAAAAAACACAGCTGAGGTGATAAGGTTCAATCTAGCCTCAGGAAAACTACAGAGCAATCACTGCTCCAAAAGGAGCAGAAACAAAGAAGCAGAGTTTCGGTTTACAACTGGCGACAGTACTGAGAAAGTTCCCAGGACTAAGGAGCACAACTCTCCAGGTTTATTATGCTCTGGGCACAGTATATGTTTCTCCTCTTTCGAATTCATTTCAAGATTCTCCAGGGCCGGGTGCAGTGGCTTACGCCTGTAATCCCAGCAGTTTAGGAGGCTGAGGCAGGTAGACTGCTTGAGCCCAGGAGTTTGAGACCAGCCTGGGCAACATGGTGAAACCCTATCTCTACCAAAAATACAAAAATTAGCCAGGCAGGCGTGGTGGCGCATGCCTGTGGTCCCAGCTATTCAGTAGGCTGAGGTAGGAGGATCACTTGAGCCAGGGAGGTCAAGGCTGCAGTGAGCAGAGATCATGCCACTGCACTCCAGCCTGCGTGACAGAGTGAGACCCTGTCTCAAAAAAAAAAAAAACAAAAAAGAAAAAAAAAAGAAAAAGAAAAAAGACAAAGAAAGGAAAAGGACTCTCCATTTCTTAAGCTAAATGCCTAATGCTTTTGTAGTAATCCAAGCCATTGTGCCATTAAATTTCCTTAGGCAACAGCTTTTGTAAATATATCCTACATAGTTTACAGCTCTCTGGTCTAATTTATGCAAGTTCTGCTTCTAAAGGTCATTTAGCATGTTTCCTTCTTCTGTTTTGTCCCCCACAAAAAAATTAACCCACATTCTAGATATAAAAAGTGTTCATTTTAAAATATGAAAGTGTTAATTTTAAAAATAAAATGGAAATTTTATTTTTAAATGTACTTTATGTCTTTCATTCTTAAATATCTAATTGCCATGGCTCTGCTTTACCTATCCAATGCTTATTTCCTAAAAATGATTATTAGAATCTTCTTAATGTAATATTCTGTTATACCTAGAGGGAAAAGTAAATGAAAGAAAGCCAAGAATTAAAACTTTGCAGGTGCTAAAGTTCTCTCTCTCTCTCTCTCTCTCTCTGTGTATGTGTGTGTGTGTAATTTTTTTTCTAG
Seq C2 exon
CTTTTCACTGAGTATGGCAGACTGGCAATGGAGGAAACATTCCTGAAGCCATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198513:ENST00000358385:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(21.3=100)
A:
NA
C2:
PF0226314=GBP=FE(24.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development