HsaINT0015060 @ hg38
Intron Retention
Gene
ENSG00000033627 | ATP6V0A1
Description
ATPase H+ transporting V0 subunit a1 [Source:HGNC Symbol;Acc:HGNC:865]
Coordinates
chr17:42498924-42500923:+
Coord C1 exon
chr17:42498924-42499042
Coord A exon
chr17:42499043-42500706
Coord C2 exon
chr17:42500707-42500923
Length
1664 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGT
5' ss Score
5.56
3' ss Seq
TTTTTCTCTCTCCTTTTTAGCTA
3' ss Score
11.95
Exon sequences
Seq C1 exon
ATTTGGAACATTGCTACCAATAAACTGACGTTCTTGAACTCCTTTAAGATGAAGATGTCTGTTATCCTTGGTATCATCCATATGCTGTTTGGAGTCAGCCTGAGTCTGTTCAACCATAT
Seq A exon
GTGAGTTGTTCCATTTCTGTCATAAGAATGTGCATAGTTTAGAGAATGCTTTTGTGTAAAGAAATCATGACATCTTTGGGGAGGGATTAATAACTCAGAACCTCATTCTACATTATAGAAGTGCTTTTCTAAAAATTTAATGGTGTGGCCAGGCGCGGTGGATCATGCCTGTAATCCCAGTACTTTGGGAGGCCAAGGCCGGTGGATCACCTGAGGTCAGGAGTTCGAAACCAGCCTGGCCAACACGATGAAACCCCGTCTCTACTAAAAATACAAAAATCAGCCAGGTGTAGTGGCACGCGCCTATATTCCCAGCTATTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCAGAGGTCGCAGTGAGACAAGATGGCACCACTGCACTCCAGCCTGAGCGACAGAGTGAGACTCTGCCTCAAAAAAAATAAATAAATAAATAAATTTCATGGTCTGGCCGGGTGCAGTGGCTTACACTTGTAATCCAGCACTTTGGGAAGATGAGGCGGGCAGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCCACATGGTGAAACTCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTGGTGGCGTGCACCTGTAATCCCAGCTACTCTGGTGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCAGAGGTTGCAGTAAACCAAGATAACACCACTGCACTCCAGTCGGGGTGACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAATGTTGATGGTCTTAAATTAGACTTAATATTAGTCCTTTAACAATTTACTGTTCCAGTAAAGATCCTTGAAAAAAACTTGAGCAATTTTCATCAAAATAAGTGAGGTCTCTTTTTTTCCTTGATGTGCAACTCACATAAAATTATTAGCTGTGGACTGGGTGTGGGGGCTCACACCTGTAATGCCAGCACTTTGGGAGGCCAAGGCAGGCGGATCACTTGAGCCCAAGAGTTCAAGACAAGCCTGGGTAACACGGCAAAAGACCCCATCTCTACAAAAAAAAAAAAAAAAAAAAGTTATGAACTGTGGTCTCAAAATGTACTAGATTTTTCCATTCTCTTTCTCATGGAGAGAATGGTGGGGATGGTATTGGAGCCGTTCAAGGTTCAAAAGTTTAAGGCCTGGCACAATGGCTCACATCTGTCATCCTGCACTTTGGGAGGCCAAGGCGGGCAGATCACCTGATGTCAGGAGTTCAAGACCAGTCTGGGCAACATGGCAAAACCCCATCTCTACAAAAAAATGTAAAAATTAGCTGGGTGTGGTGGCGCATGCCTGTAGTCCCAGCTACTCGAGAGGCTGAGGTAAGAGGATTGCCTAAGCCCAGGGAGGTTAAGACTGCGGTGAGCCAATATTGCACCACTGTACTCCAGGCTGGGTAGCAGAGTGAGACCCTGTCTCAAAAAAGAAAAAGCAACAGCAAAACAAAACCAAGGTTCAAAAGTTTGACCGTGATAGTTAATCCTGCATTGTCTCTGTTGTCTCCAGCTTCTGGTTGCTGCTGCTTAAAGTGATAAAGACAGAATTGAGGGGGTATTAAGTAGAAAAATCTAGTGAATACTCCATTCAGTGTAGGAGTGGCCCTAGGCCCATTTACCCTTAACATTTTTTTCTCTCTCCTTTTTAG
Seq C2 exon
CTATTTCAAGAAGCCCCTGAATATCTACTTTGGATTTATTCCTGAAATAATCTTCATGACCTCTTTGTTTGGCTATTTGGTTATCCTTATTTTTTACAAGTGGACGGCCTATGATGCTCATACCTCTGAGAATGCACCAAGCCTTCTGATCCATTTCATAAACATGTTCCTCTTTTCCTACCCAGAGTCTGGTTATTCAATGTTGTATTCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033627:ENST00000393829:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.9=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(10.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGAACATTGCTACCAATAAACTG
R:
TGTCCAGAATACAACATTGAATAACC
Band lengths:
334-1998
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development