HsaINT0015750 @ hg19
Intron Retention
Gene
ENSG00000224470 | ATXN1L
Description
ataxin 1-like [Source:HGNC Symbol;Acc:33279]
Coordinates
chr16:71881913-71891231:+
Coord C1 exon
chr16:71881913-71881974
Coord A exon
chr16:71881975-71883526
Coord C2 exon
chr16:71883527-71891231
Length
1552 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
TCTGATTTGTTCCCTAATAGATG
3' ss Score
7.99
Exon sequences
Seq C1 exon
GCTCCCGAGCCAGCCGGGAGGACACTTACTACAGCTGCTCAGAAGCACCACTGGAAACTCAG
Seq A exon
GTAATACCGGCACTTTGAATTCCTTGTTTCAGGAAAATATCTGGGATGTCACAGTGGAAAAACAGAACAGAATGTAATATAGAAAGCTCTTTTCAGATCCAAAGAACTGGAACCTGGTTGGAAGAAATAGGCAGCAAAGTTCATGTGCACTGAAGTGTTCAGACCAAAAAGTTGCTTTATAACAATGGACAAAAGCATTTGTGAAAGGTGACAATAAGAGAAAAGGGAAAGAGAACTTTCTTATGAATCATACAGATACGGGGAAAAAAACAGGCATGTTTAGAGGAATGGAACCAGAATTTCATGGAGTGGTGCCTGGAGCAGACCTACAGTGGAGAAGGAGCTATTGGTAAAAGAAAGCACAAAGAAAAAAGAAAGGGAATGAATAGAGAAGGCAAATTGAAGGTGATCATTGAGAAGAAGCCTTTTGAGACTAGGGAACCGGAAGTGTACGTAAGGTCAGAAGAATTTAGAATTTTGTTGTTCTTTGGTGAAGAGGAGAAACAAGTTGACAGCAAACTAGTTTAATCACTTTCACTATATAGAGGCTGAGTTAAAATGTATTATTTCATGGGTCAAAGATGTTAATTTTCATAACCTGGTTAGGGAGCAAAGTCTTAAAAAAAAAAACAAAACACGAGCAGACCTGAGGGTTTTGGCACCTAGGTCCTTGAGGTACTGATGAGATGAGGCAAAGGAGGAAGAGAGTTTTTAGCCAGGCTTGGGATAGCAGTAGGTGAGATCATAACCCAAATTAGGCTACAGAAAGGAAGCAAGGATGAGGTCATATGTTCAGGAAAGAAGGTGGCACATTCATGTTTGGTAGCAAAAGGAGAAACTTAAGAAAAAGAGCCAGCAGGAGGCTGGGCGCTGTGGCTCACACCCGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCGGATCACCCAAGGGCAGGCGTTCGAGACTAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAGTTAGCCAGGCGTGGTGGTGCATGCCTGTAGTCCCAGCTGCTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGCGAGGTTGCGGTGAGCTGAGATTGCACCATGTACTGTGGCCAGGGCAACAAGAGCAAAACTCCATGTGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAGCAAAAGAGCCAGCAGGAAAGACCATGTGTTCAAAGCCCCCTTTGGGAAGAAGGCAGAAAAGAGACAAGGTGCTTATGAGACACATGACTAACCGTGAAGCTGTTGGTCTCCCTGGGCTTGTGGAGCCCACAGGTTATTTGTGCATTGGTGAATGCGTGTCCCTGTAGCTCTTTGTGCCTTGTGATTTCCCCGACTGTTTCTCTCATGTCCCAGGCTGGATGAGTTGGGGGTAGCCTCCTTGTCTGCCCCTTTCTCTTTCCTCCTTATTTTCTAACAGTCCCCTTTGTTACATCTTCCTCCATGGCACAGTTCTTTCTATTTCCTTTGTCTTGGCTCATCCCTAGGTTACTTTTCTTTGCCTCTGATTTGTTCCCTAATAG
Seq C2 exon
ATGTGGGCGCCCCAGCCAGAAGCAGAGAGGGGTACAGGGAAGCTACAGAGAAGCCCCTTCTGATGCCCCAGGGAGCAAGTCGACTCCTTCCAGGCTCCAGGAACACCACAAAGCAATATGAAACCTGTTCATGAAAGGAGTCAGGAATGCCTTCCACCAAAGAAACGAGACCTCCCCGTGACCAGCGAGGATATGGGGAGAACTACCAGCTGCTCCACTAACCACACACCCTCCAGTGATGCTTCTGAATGGTCCCGAGGGGTTGTGGTGGCTGGGCAGAGCCAGGCAGGAGCCAGAGTCAGCCTGGGGGGTGATGGAGCTGAGGCCATCACCGGTCTGACAGTGGACCAGTATGGCATGCTGTATAAGGTGGCTGTGCCGCCTGCCACCTTTTCACCAACTGGACTCCCATCTGTGGTGAATATGAGTCCCTTGCCCCCAACGTTTAATGTAGCGTCTTCACTAATTCAACATCCAGGCATCCACTATCCTCCACTCCACTATGCTCAGCTCCCATCCACCTCGCTGCAGTTCATTGGGTCTCCTTATAGCCTTCCCTATGCTGTGCCACCTAATTTCCTACCGAGTCCCCTCCTATCTCCTTCTGCCAACCTTGCCACCTCTCACCTTCCACACTTTGTGCCATATGCCTCACTTCTGGCTGAAGGAGCCACTCCTCCCCCACAGGCTCCCTCCCCGGCCCACTCATTTAACAAAGCTCCCTCTGCCACCTCCCCATCTGGGCAATTGCCACATCATTCAAGTACTCAGCCGCTGGACCTTGCTCCAGGTCGGATGCCCATTTATTATCAGATGTCCAGGCTACCTGCTGGGTATACTTTGCATGAAACCCCTCCAGCAGGTGCCAGCCCAGTTCTTACCCCTCAGGAGAGCCAGTCTGCTCTGGAAGCAGCTGCTGCAAATGGAGGACAGAGACCACGAGAGCGAAATTTAGTAAGACGGGAAAGTGAAGCCCTTGACTCCCCCAACAGCAAGGGTGAAGGCCAGGGACTGGTGCCAGTGGTAGAATGTGTGGTGGATGGACAGTTGTTTTCAGGTTCTCAGACTCCACGGGTAGAGGTAGCAGCACCAGCACACCGGGGGACCCCGGACACTGACCTTGAGGTCCAGCGGGTGGTTGGCGCTTTAGCTTCTCAGGACTATCGTGTGGTGGCAGCTCAGAGGAAGGAGGAACCCAGCCCCCTCAACCTATCCCATCATACCCCCGACCATCAGGGTGAGGGGCGAGGGTCAGCCAGGAACCCTGCAGAGCTGGCAGAGAAAAGTCAGGCCCGTGGGTTCTACCCTCAGTCCCATCAGGAACCAGTAAAACATAGACCTTTACCCAAAGCAATGGTTGTAGCCAATGGCAACCTGGTGCCCACTGGAACTGACTCAGGCCTGCTGCCTGTGGGCTCGGAGATCCTGGTAGCATCAAGTCTGGACGTGCAGGCCAGAGCCACCTTCCCAGACAAGGAGCCAACGCCGCCCCCCATTACCTCCTCTCACTTGCCTTCCCATTTCATGAAAGGCGCCATCATCCAGCTGGCTACGGGAGAGCTGAAGCGGGTGGAGGACCTCCAGACCCAGGATTTTGTGCGCAGTGCCGAAGTGAGCGGGGGGCTGAAGATTGACTCTAGCACGGTCGTGGACATTCAGGAGAGCCAATGGCCTGGATTTGTCATGCTGCATTTTGTGGTTGGTGAGCAGCAGAGCAAAGTGAGCATCGAAGTGCCCCCCGAGCACCCCTTCTTTGTATATGGCCAGGGTTGGTCCTCTTGCAGCCCTGGGCGGACGACACAACTCTTCTCTCTGCCCTGCCATCGGCTACAGGTGGGAGATGTCTGCATCTCTATCAGTTTACAGAGCTTGAACAGTAACTCAGTTTCTCAGGCCAGCTGTGCTCCCCCAAGCCAGCTGGGTCCCCCCCGAGAAAGGCCTGAGAGGACGGTCTTGGGATCCAGAGAGCTATGTGACAGTGAGGGGAAGAGCCAGCCGGCAGGAGAGGGCTCCCGTGTGGTAGAGCCTTCCCAGCCTGAGTCCGGTGCTCAGGCCTGCTGGCCAGCCCCGAGCTTCCAAAGATACAGCATGCAAGGGGAGGAGGCACGGGCTGCGCTGCTCCGTCCCTCTTTCATTCCACAGGAGGTAAAGCTGTCCATTGAAGGGCGTTCCAATGCGGGAAAATGAACCTCTTCCCCAGACCAGGACTGGGGCTTTACCCCAGAGCCTCGCCTCGCCGCCGTGAGCAGGCAGAGGATTTGCACACGCCGAGCAGGGAATGGCTTTCTTGGCAGTGAGATTTGGGGGAAAGGGGAGGCATGAAGTCAGCCTCCCAAGGCAGGATCTGTTGTTCATTACCCCATGGCATCCTTTCAGGACAACCCCAGAGGGTGTTGTGATGGGGAGCAGCAGGCCTGGGGCAAGGAAGGAAGGGGGTGCACACAGGAGAAGAAACATTCCAAAATCAGGGCCTCCCTGTTCTTTCCTCCCCATCCCTAGCTCCTGCAAGAGAAAGTCCAGGCTTTGGGAGCAGATGGCAGAGGGAGGGAGTAAAGAAAGAGCCAAAAATGATGATCCACAGCTTATAGTAGCAGTTAAACTGTCAGAAGTTTTTTTTCTTTTTTGTGGTAGAAGGGCAGGAGGCCCCAAGGTTGGAAATAAGAGGGTTCCCACCCAGAACCCTTCTTGTGAGAGATGCGCACTTTAAAGGGTGATTTTGTTCCAGATGTCTATGGCTGGGTGTGTGGGGGAGGAGCACTCTCATCTGCAGGACTCTGCTTGATCCTCTGCTTCATAGCCCTTCCCCATCTCTCCTCACCATTCTGCCTACAAGGCTTCTAGCAGCACGGGGGCCCGGAGGGAGAGCCCCTTCAGGGTTCAGAGTGAAGTACTACCTTGCCAGGGACTCAGTCAGGGGACTTTGGGAGAAAGACTTGATAGCCAGGCTGACTGGGTTCTAGGCAGGCCCTCTGGAAAGGTAGCTCACCTAACAAAGCTCCTCCATCTCAGCATGCCAGACCCACTTTGAAATCTCACAGAATCTTGCTGGTAATGGTGACTTTAGAACTAGTAGACCCTTTTTCCCAGGCACTGACCCCCCACCTTTGTCTGTGTTGTGCCCAAGTGCCTGCGCCACCCCCACCCTCCTGCTGCGCTGACCGCTGCATGGTGTCGTGACCTGGGCCTCATTTGTAGCTGCACTGCCTTTCCTTGTCTGCAAAGTTGGTTTTGTCCACTCTGACCAAGACCTCTAGTTTTTGGTGGGTAGGGGGTCTCTCTGGTTTCCCCTTCAGCTATAATCTCTATTTTTAAAATCTCAAAATCATGTCCCCTCCACTTCCACTGCCAAACAGCTTGGTGAAGAAACAAGAAGGGAACTATGCCCTGGGCCAGGGCGAATGCGTGGCTGGGCAGTGCCCATCATGGCATTTTCACATGTCCCATATGCCCCTCCTGTCTTATTCCACTGCTTCTCCCAGCATTCTGGTGCCTCCAAGCCATCCCCTCCCACCACCAGCTCTAAGATTCTAGGATAGTCTTGATAACATTTCAGTACCTGAATAGATGTCATTTTGTGTTGGTATATTCCTCTGCAAAAAGTATTTTCAATCTTGGTTGCATTGGCACCCCCCCTACCCCCCACCAATGTCTTAATCCCACATTTTCTTCACAACTTTTAGCATCAGCTCAGACCGTGGGGTTCCACTGGGTATTGGGAATTAGGCTCCCCCACTAGCTTTCAGGTGGGTAAGTTTTTTTGTTTGTTTTTTGGGGGTCTTTAGACTCTTGAAGGCAACTCAGGGTATTGTCCACGCAGCTCTCTGGTTAGACTTCTCCCAGGCTATGATCCTGGCATGTCCTTTATAAGGTATACTTGGATTGGCCGAGACCTGGCCTGGCATCAGGAGTCCAAACCTCTGAGGTCTGATCTCTGCTCTGTCAAGGACTTTCGGCAAGTCTCGTGACCTCTGGCTCTTTCACTTCCTCCCCACCTGCCAAATGGGGATAAATAATCTTACCTACCTCCTGGGGGGAGGGGAAGTTCTGAGAATGGAGTCATTCTTAGTGTTCAGGTGCTAAAGGTTGTTCTCCTGGGGGAACAGAGTGACTGAAACTGGCTTGTTTGCTACAAGCCCTACCCTCCACTCTTTCATTCCTTGAAAGCAGTTTGCCTGGTCAGTCAGCTTTTGGGGGTCCATCAAAGGAGGTTGCTGACCTGACCGTGAGTGCTTCAGTATCTGGTTTGTGTCAGAACCAGACGCCAACTTTGTACTGCATTTGGGATCATATCTTTCCCCTTCTCTGTCCCCCATTCTCTGAATGCTGCTTTCTCTGGCTTGTTTCCTACAGTGGGGGCCTGTGGGGTTGAGTCTTGAGGAATCCCCTCAAATGAGAAGGCCTTGGGAGAAGGCCTCATCTCTGGCTGTTTCATGAGCAACTCATTCCTAGAGTTCATTGTTTGCATGGGTTTCTCACAAGCGTCCTTCCTCATAGGAAGGCTCATCAACTGAATTTAGTGACATGTACACAGTAGATGCTCAAGCAGTGTCTGCAAGGACACAAGCTGAGCTTTCTCCTTATGGGGCAAACCTATGTCTAACCAGATACAGACCAATTAGTTTAGATCAAATCACCTTCCACTTGGGCTACTTGTGACTTTCCAACCTGGTAACTTCCACTGAATTCTGGAAAGAGAAATTCTTGAGGACCCTGGCAAGTTGGGCCCTGACCTTTCTGTTGCTGTCTCTTGCTGGTGAAGCAATACCAGCAGTTCCTGTAATACCACAATATCGTTCCATGCATATATAACATATTAATACTTGATTTTGCTGAGCTGCAAAGGTATCTGTCATAAAATATGGTCCCCAGGAAAAGAATCTCTGTGCTCTAAATCTCGGTCAGAGCTGTGGCCTCCCCCTTGCCTTTAACCTCTAGTTTAGTCTTTTCCTCCAGGCATGAAAAATATGACTAACCTGTGGTGTGTCCATTCTTCCTTATAGGAATTTCCTGAGTTTGCAGGAGACATGAGAGCAGTTTTTAGCGAGTATTTTAGTGGGAAGTTGCCAACTTTTTAAGAATGAGCAGTTGACAAGGGCCAGAGCCTGTCCCTTGTCAGCAGTAGGACATTTCCAGCTCTTAGGAATAGAAAGGAGGACTGCTGACTGTCTGGCGCTGTATAAAAATGTGTATACCAATTTGGGAATAGGGGAACCCAGTCATGGATGGATAATAAGCCAAGTCTTGAATCATTCCTATCAAGATTAGTATACATGAGGAAGAGGTGGCATGGGGGGAAGGGGCTCTGGGAGTTCAGAGCTGAGTACTTGTACCTGAGGGAGGGCCCCCAGCCAATCTGGGCTGGTCCTTCTATATTCTTGGTCCCAGTTGGTCATAACACCAAGGGCTTTGCCCTGCGCTGCTTTGCCACTGCTGCTGTCCGCTCACTGTCCTGCCTGCTGTCCTCTACAGCTCCCTATCCTTCCATGTCTTTGGCCATGTAGATTAAGTGTAGGCGTCCGGTTCATTCTTACCTGTGTTAGGCCATGTTATTTTATAGCGAAGTCATGTTCGATAGGGATGGTATGAAATGCTGCTGGTGGGCTGGTAAATCCAAAGGGATAAGGCTTCAGTGCTGTTGGGAGCCCTCTGGCTCCAAATGTCTGACTATCTTGAGGGAGAAACAAGCAGGTTTCTACTAGTGGTGTCTTCTGTTGTATTAACTTCTTTCCTTTGTGGTATCTTGTATCCTGTTTTAAAAACTAAATGAAGGGAACCACATTAGGGCCCATGCCAGCATCCCAGTGAAGTTCGTCCAGCTCCAGTTAGGTGGATTCTGGAGTTCGGAGAGGGTTTAAAGTTTGGCTGAAATAGCACCTCAAGTGGGGTTTAGTTTTATTTTTACCTGCGGGCATCATGGGCGATTTAGGGGGAAGCACAGGATGGTGGTGTGGTTTAAACCTGCAGCAAGCAGGCATGTTGAAGAGTTGAGTGATCACGCTGGAGATGAAGGGTTGGACATGGATTGACTGGGAAAAGGCCTGGGTCCATTGGAGTAAAGATAACCTAGTCGATTGAATTGGCCATGGGAAGTTAGGTCACAGTCTTATAAACAAAGTAAATAGGACAGAGACTAAGTTTTAGGGAGACATCTTGGCCTCCTAGGCTAAGTTTACTAAACCACACTGAAGCTATAGTACCTTCCAGATGGGCAAAAGTGTACACTACAGTTGAGGAGCTGAACCTTATTAGGTTGGATGTCGATCAGGAACCTGTTTGCCCTTTGCTGGGAAGCCTTCACTCTCCAGCTTTCCTGGGGTAGGGAAGGTCTCCCACATTATGCAATAATAAAATAAGCATCTGGGTCTTTGCAGCTGTCAGTTGCTCTTTCAACTCTAGGATCCATCTTTGGACCAGAAGCCTGGTCTGTGCCTAGGATGACACTGGCCCCAGAGATGCTAGAGTCGACTGCACTCTCTCCTTAGCTGCAGACCATGCACAGTGCCTGGGGCGGAAGGAGGAGAGGTGTTGCGGTTTGCCCTGCTGCCTCCCCAGCAGGAACAATAGTCATAAATGCACTTTTCACACTAAAGGTTTCTTTATTAGTTCTCCAGTTAAACCTAGATCCCTCCCTGGTAGATTGCGAACTCAAAGTTTTGTGATCCCAAAGCCATTCCACTGCAAATGCCCAGCAGTGAAGATGGCCTCAAATTGGGTTCTTGCCTGCAGTGTGTGTGGCAGCAGCCCATGTGCCTTTACCTGTTGTCAAACTTGCAAGCATTTATTTGTCTTTATGACTGTCATGGGGACTGAGGTTCTTCAGAGAAAGAGTGTGAGCTGATGACACAGTGGTTTTACACCCACCCCCTGGGCAGGGAGTTTGCACGTAGTTGTGAGCTGTGAGTGGTTAGTGCATTGCTGGTATTGCTGAAGGCAGGGTTGATCCCTCACTTGACTGATACTTGCATTCAAGAGAATCTAGATTGTGTTGGGGGAGGGACTGACTGTACTCATGGCTAACTTAAAGTATTAAAATAAGGCTGTCCCCTACAACCTTCTTAGTCACACAGGATCCCTGTAGCCAAAACAGTATATGATCCAGCTGCAGAGAGCAGACTGCTCTCAGCTTGCACAGCACCTTAGGCGAGGGAAGAATATACGGATAGGGAATGGGGTGGAGAAAGGATGGGAATGTTGTCATCCAGGTGGCTTTAGGGTCCTAAGGAGTGGAGAAGGATGGCACTGGGGAGGTCTGGATGGATCTGTGTAGGAGTTCCCTGTAGATAAATTACTGATCCCCCATCTACTATCCCCAGTATGTAATGGCTGAATTAATATGTAATCAACTGCATTGTATCTAAAGCCTTAGAACTAGTCAGGTGCTCCCTCCACCCAATACCATTTCTTACCCTCTAATCCTACCTGATCTTTAACAAAGCATTAATAATTCTAAGGATAATCTCTATTTTGTTGTGCTTTTTTGTAACTGTTTTAAATAAATCAATTTGTACTGTATATTTGTACTTTTGTGAGATCCTTTTTGCTGTTTTACCATTTTAAGTCTCTGTACTTGGCTACACACAGATTGTATTTTTATTGTTAATGCTCTTCTTATGGATACCTGCATTTAACTTGTGGACTATGTAAACACAATATCTATCAATATCTATATATCTATATATCTATCTATATAAACTACTAGCTTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000224470-ATXN1L:NM_001137675:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF085177=AXH=WD(100=16.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGCACCACTGGAAACTCA
R:
TGATGGCCTCAGCTCCATCA
Band lengths:
354-1906
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)