HsaINT0016646 @ hg38
Intron Retention
Gene
ENSG00000125492 | BARHL1
Description
BarH like homeobox 1 [Source:HGNC Symbol;Acc:HGNC:953]
Coordinates
chr9:132587329-132590266:+
Coord C1 exon
chr9:132587329-132587551
Coord A exon
chr9:132587552-132589227
Coord C2 exon
chr9:132589228-132590266
Length
1676 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GCGTTTATTTCGGCCCCCAGGAC
3' ss Score
9.1
Exon sequences
Seq C1 exon
TGAAGGAGGAGGGCGACCGCGAGATCTCCAGCTCCAGGGACAGTCCCCCGGTGCGCCTGAAAAAGCCACGCAAGGCGCGCACGGCCTTCACCGACCATCAGCTGGCGCAGCTGGAGCGCAGCTTCGAGCGGCAGAAGTACCTGAGCGTGCAGGACCGCATGGAGCTCGCCGCCTCGCTCAACCTCACCGACACGCAGGTCAAGACCTGGTACCAGAACCGCAG
Seq A exon
GTGAGGCCTGGCTGCGGGGGTAGAGGCAGAAAGGGAACTTCCCCTTTCCTCACAGCTCCTGGAGGGGACCAGGAGTCTACAGGTTGGTGCTAAGGGAGGGCCCCAGAGCCTCCCCCATTCTGTAAAAGTGGGAAACTGAGTCCCTAAGGGGACAAGGCCTTGCCCAAAGTCCCCACAGCGAGGGACAGAGATGAGACTAGACTTGGTGTCCAGCGTCCAGTCAGCCCTCCCCCGGATGGGTGGACAGACACATAGGCCACTGAAAATCCAAGTCCTGCCCCAGCTCAGCCGGAGTGGGGGGAGGTCTGCCTGGAGCCCCCACCTGAGCCAGCGTGGGTCTTGGAAGCCCCAGGCCCTTGGAGGGGTGACAGTCTTGATGCCCAGGAAGCCTGTGAAGAGGACGGCCAGGCAGTGGCCCTTGGGGTGTTGAAGCCTGGCCCAGACCGGGCAGCTGCCGCAGGGGCCTCAGAGTTTCTGTGAGGCTCTTCAGGCCTCCCCAGCCTTTCTGGTCCCAAAACCCGAGGGGGGAACTGGCCAAGCCCTTGTTCCTTGGGGACAGGGTGACTGGGAAGTGGGTGTTGGGGCACCGGACTTGAACTCGTTTCCTAATTTCCCTCCCGAACACACTCACCAGACGTAGATGCAAATGTACAAACACAGAGGCATCCACACACTCAACCCAAATAGCCACACACCGACACACACATCAATACAACTTGCAGTCACACACGCACGCACGCTCAGCCCCACAGTCACTCGCACGCTCTTAGCAGAGGCAGGAATGGTGCTTTTCATAAACAAGCCTCAGAACACATCGCCCCATTAATAATAAATACTGATTACTGCTCCGGGCATCAATAATTAAGGCCTGTTACAGTAATTACACAATTATGATGATGATGAATAATTCAGGGAGGGAAACAGGGCTGGTGTGGCTGAGCCCACCTTAGTGGGACCCTGGCTGGTCCGCCTAGCCTCACCTGCAGGTGAGCCTAGGGTCCAGGCCTGACTTCTCCAAACCCCAGGCCGTTGGCTGGCCAAGGCCTCTGGACTTTGGGGCCAGACAGTGCGCAGGGCTCGCAGTGCGAGCCCTGGAGGATGGCAGGTGCAGCCTGCTCCAGCCGGCAGGGCGTGCGAGCCGGGAGCGGGTCCTCTCCGGTTGCCATTTCAGGCCTGCTCGCTTCTGCTAGCTTGCAGCCCGGCCAGCCTGCAGAGGAATCAATCGCATTCCCTTCCCTGAAGAGCACCCCCCCATCCCCTCAGGCCTCTCCAGGGTGATCCTACCTTCATAAAGAGGCACGCGCAGGGAGGAGCACCCCCTACCCAGCTCCAAGGGTTCGTTCTGCGATCTCCTGGGCAGGGTAAGGCGCAGTTAGAGCCGGGCTTTGGGGTCAGACAGCAGGGCTTAAAACCCAGGCTCCTTTTTGAAAACCGGCCCAGACCTCAGTTTTCCTCTCTGTAAAGTGGGGTAAGAGCCACGGAAGGCCGGTGGAAGATAAAAGGAGAGGATGCACGTAAGGCGTGCGATGGTGCCTGGCACTCGGTTATTTATTAACAAATGAGTACGATCCCTCTTGGCCTCCCTACAGGCTCTCTGGGCCAAGCAGTGGGGAGGGGCTGGGGTCGCTGGATGCCCTAGCCCTGATCCCGCCATACGCGTTTATTTCGGCCCCCAG
Seq C2 exon
GACTAAATGGAAGCGACAGACGGCCGTCGGGTTGGAGCTGCTGGCGGAGGCAGGCAATTACTCAGCGCTCCAGCGGATGTTCCCGTCGCCTTATTTCTACCCGCAGAGTCTGGTTTCCAACCTGGACCCCGGCGCGGCGCTCTACCTGTACCGCGGCCCCAGCGCGCCGCCGCCTGCTCTCCAGAGACCTCTGGTGCCCCGCATCCTCATCCACGGACTCCAGGGCGCCAGCGAGCCGCCCCCGCCGCTGCCCCCCCTGGCCGGCGTCCTCCCACGCGCCGCGCAGCCTCGGTGAGGCGCCCGTCGGCTCCGGGGCCTCCTCCCGCGGGCTCGGCGTGGCCCCTTCCGCCCGCCTTTCTGAGGGCGCAGGTTCGACGCCCTTTCCCGGGAGGGGGCCCTGCCCGGCCCTCCCTGGCGCCCCAGCCCAGTGCCCCCCGAAGGGCCAAATGCCAAGTCCACTGAGGCCCGGACCCCGGACTGCGTCTCCCCAGCCCCCCTCGGCGTCCTCTCTCGCGGCCGCTCTGTCCGGGAGCCATCCCCACCCGCCGGGTGTACATACGCGTCTCTGCCACTCCCCACCCCCAGCCTCTGCCGGCTCCCCTAGGCAACCCCTTTCTCCCCAGGAGCGGGTGCGGCTGATTCCCAGGCTTCGCTCTCTCCCACGCCCCTTCTACGCTCCAGGTGGAGAACAGCCCCTCTCCCCGCGCCCCCGCCAGGGAGAGAAGGGGAGTGCGGAGCCCCGTCTCCCTACCCCTCGAGCACCTGGGCCAGCGGCTGAGCTGTACATACCGTGTGCAAAGTGTATATGAAGTTATTTATTCGTGACCCATGAGCCCGTGACCGTGTCCGTGGATTAGTGAGTCTGTGGCCTGTGCCCTCCCCACTCCCAGGCGGGGCAGGAAGGGGCCAAGGGGGCTTGCCCACCCACCCCGACCCCAGCCCCCAGCCTCAGCCCCGGTCCGGGGGCAGCCAGGCCTCTCGGGTTCTCTCTTTTTTAAATGTCGAAATAAACTTCTTACAAATGACCAGGCGCCTGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125492:ENST00000263610:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.484 A=NA C2=0.579
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(89.5=68.0)
A:
NA
C2:
PF0004624=Homeobox=PD(8.8=5.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCACCGACCATCAGCTG
R:
AGTCCGTGGATGAGGATGCG
Band lengths:
358-2034
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development