HsaINT0016712 @ hg38
Intron Retention
Gene
ENSG00000117523 | PRRC2C
Description
proline rich coiled-coil 2C [Source:HGNC Symbol;Acc:HGNC:24903]
Coordinates
chr1:171566592-171568339:+
Coord C1 exon
chr1:171566592-171566843
Coord A exon
chr1:171566844-171568246
Coord C2 exon
chr1:171568247-171568339
Length
1403 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TTTCTATTACTACTTCACAGGAG
3' ss Score
6.72
Exon sequences
Seq C1 exon
CTTCCAGATTTGAGTCCAGTAGAAAACAAAGAACACAAACCTGGTCCCATTGGAAAGGAACGTTCATTAAAAAATAGAAAAGTAAAAGATGCCCAACAGGTGGAGCCAGAAGGACAAGAGAAACCAAGCCCAGCTACAGTCAGAAGCACAGATCCTGTCACGACAAAGGAGACTAAAGCAGTCTCAGAAATGTCTACTGAAATAGGAACAATGATCTCGGTATCATCTGCAGAATATGGTACTAATGCAAAG
Seq A exon
GTAAGCCACATGTAGGGATTACCAGTTCAACAGATGCAAGCCATGTCTAAAATGAACGAGAAGAACAGCAACAGTCTGCTTTTTTTTTTCCTGCTGAGGCATATAACTCTATAGATTATTTCCGCAAAGAAGATTTTGTTTCATGATTTGCATATGTAATCTAAAGAAGTTCTTTATAGCAAATTATATTTCTTTTTGAGGAAATTTACTCTGAATTCTGGACTATTTGAGTAGCTTAAAGTGAAAAACATCTATACAAAATCTGAATACTTTGAAAGATGGCTCTATATCACTTTTAATATAAATAGAATTACAGTAGAGCTTTATCTTGCCCACTGGTGACATTCTAAAGTCAGGAAATAAGGCAGACTTTTACTAACTCCAGTATAGCCAGTTTTTTTTCATAGTTGGAACAGATTACTGTTTCTTTGGTTGAACACTGGAGGCTGTTGACTCACATTTAGGGGCCACATTGAATGAAACGTGTATCTAAAAATGCTCATTAAGACAAGATATGTTGATTGACCATGGGAACAGACACTCATGGGAATAGCAAACATATCTGCGATTTTATATTGACTCTGGGACATAAACTCTGAGAAAAAGTTACATGCAATTTTTTATATTATCTGAATATTAGTCTCTTTTTAATTGCCATACAGCTGAATTCATATAAGTAATAGCTTATGTGGTCCTACTCTGCCATATTTCAAAATGAGATTTGTGACAGGAAACAAGGAGTGTACCCTAAAACCTGAGTAATTGCAACAACTAAGATCTTGGTAATTGATAGTAAGCTAAGAATGAATGTGGGAAACACACAAAAGATTCTTTTAATAACCTACAGAAATAAATATTTGGTACTGTTGACAGTCTCCTAGTACTAAATGTACAAGAATGCAGTAGTAGTTGAAATGCTATCATTTTGATCGTGAGTCCATGTTGTATTATTCCATTGTTAGTTGATTGAGTGAGTTGAGTCTTAAAGTCTGCTCTCTTCCCCTGCTTTCTTCCAGAACAACTTTACAACTATTAGGCTATCATTAGAAAGTGAGCAATTTGGCCAGGCGTGGTGGCTCATGCCAGTAATCTCAGCACTTTGGTGGGCTGAGGCAGGCAGATCACTTAAGGCCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAATGTCATGGTGGCGCACGCCTGTAATCCCAGCTACTTCAGTGACTCAGGCACAAGAATCACTTGAGCCTGGAAGGCAGAGGTTGCAGTGAGCTGAGATCATGCCACTGCACTCCAGCCTGCATGATAGCGAGACTCAAAAAAAAGAGGAAGAAGTGAGCAATTAATTCAGTTTAAAATGTATTTTTTTTCTATTACTACTTCACAG
Seq C2 exon
GAGTCTGTAACAGACTATACTACACCCTCTTCTTCTTTGCCTAACACCGTGGCTACTAATAATACAAAGATGGAGGATACTTTGGTTAATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117523:ENST00000367742:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAGATTTGAGTCCAGTAGA
R:
ATTAACCAAAGTATCCTCCATCTTTG
Band lengths:
342-1745
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains