HsaINT0016721 @ hg38
Intron Retention
Gene
ENSG00000117523 | PRRC2C
Description
proline rich coiled-coil 2C [Source:HGNC Symbol;Acc:HGNC:24903]
Coordinates
chr1:171584419-171587221:+
Coord C1 exon
chr1:171584419-171584526
Coord A exon
chr1:171584527-171587002
Coord C2 exon
chr1:171587003-171587221
Length
2476 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
TCTCTTTACTTATTTTCTAGGTT
3' ss Score
11.18
Exon sequences
Seq C1 exon
GCCAGAGCAAATCTTACCCAGGCCTCAAATCTTTATTCTGGACAAGTACAACAGCCTGGTCAGACAAATTTTTATAACACTGCCCAGTCACCAAGTGCTCTCCAGCAG
Seq A exon
GTAAACTATGGCATGGTAAATTTCCTCAATTTTCTTTATTATTATTTTTATTGCTTTTGTTATTGTTTGGGAATTTAAATTGAACCAAGATGCAAGATGGAGGATGGTTTTTAAACTGTTCACTGAGATGTCCTGAAGAATTCCACTGGGTCCACGTAGAAGGGGTTTCAGGCTCATGACACCCCCCTTCTCACCACCATCACCCCCTACTTCAGTCATTCCTGTTTTTTTATATCTTCCAGGTTTTTTGTTGGTTTAGGGGGTTTTGTTTTGTTTTTTTCTGTCACCTAGGCCAGAGTGCAGTGGTGTGATCATGGCTCATTGCAGCCCAACCTCCCAGGCTCAAGTGATCCTTGCACCGCAGCCTCCTGTGTAGCTGGGACTACAGGCTCACGCCATTATGCCTGGCTAATTTTTCTTCGTAGTTTTTGTAGAGACAGGGTTTTGCCATGTTGCCCCAGGCTGATCTTGAACTACTGGTTTCAAGCGATCTGCCTGCCTCGGCCTTCCAAAGTGTTGGGATTACAGGCTTGAGCCACCACACCTGGCTGCTTTTTGTTTTTTGTTTTTTTTTAATTAAGGGGGAAAAAACAACTTAGGTTTCCGTGTAATTATTTATTCTATTTTAACAAAGGATTCAATGAATATAAAACCTTGAAAACCATTGTCCAGAATATAGTTACATTAAGTGTGATACAGGTGGTTTACCCATTAGTGCTAGGGAGAAGCCTCCCAAAGACCATCTGGCAGGTTAGCTATACATACAACAGTGTGGCAGACTGTGATCGAGCATAAATGACAAACACTTTCTTAAGTGTATGAATGCAATAATAATTTTCAGTGAAAAGTATATGGTACGTTTAAAACTATCTCTAATAATTTCATTAGCTTATTCTTTAAAAGTGGTGGAGGGCTGGTGGGGGAACAAAGTCATTAGTCATTTTCTTATAACTGTTGTTGTTTGCTATTTTAGGGAGTGATAATTCATGAATATCTTATTGACATTCAGATTAAATATAGTGTTTATGTGAAAACTGAGAGATTCTTGTTCTTCTCATAGCTCATTTTGACCAGCCTTGAAAGTATTATGTAAAATGTCTGTTTGGAAACTTGTGAATACTGCTTATATTGTGTCCTCATTTACTTTGTGATTATTTGACATGTCCTGTGGATAAATTCAAAGATAGTCCTAATTCTTTCAGTTTCTATTCTCTTCACTACAAGTAGCATTAACTAAACTATGTTGTACCTTTAATAGAAGAATGGAGATACGGTTGAGGGTTGAGTGTCTCTTACCGAAATGCTTGGGACCAGAAATGTCTCGGATTTCAGATTGGTTTTTTTTTGTGTGTTTGCGTATACATAATGAGGTGTCTTGGGGCGAGGGGCCTGTCTAAACATGAAATTCCTTTGTTTCATACATACTTTATACATATAACCTGAAGGTAATTTTAAGCAACATTTTAAATAACTTTGTGCATGAAACAGAAGTTCTGACCTCACTTCGACTGATCCGTCGCAGGAGGTCAGGTGTTGATTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCCCTCACCCAGGCTGGAGTGCAGTGGCATGATCTTGGCTCACTGCAACCTCCACCTCCCAGGTTCAAGTGATTCTCGTGCCTCAGCCTCCCAAGTAGCTGAGATTACAGGCACCCACCACCATGCCTGGCTAATTTTTGTATTTTATTTTATTTATTTATTTATTTTTTTTTTTAGTAGAGACGGAGTTTCCCCATGTTGGCCAGGCTGGTCTCAAACCCCTGACCTCAAGTGATCTGCCTACCTTGGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACCGTGCCTGGACTTGGTGTCAAATTCTCTACTTGTGGTGTCATATCAGCCTCTCAGAAAGTTTTGGAGCATTTTGGATTTTGATTTTCAGATTAGAGATACTCAACTTGTCATCACTAAGCAAAAGAAATATGTGAAATATATTAGTAGATGGATGTGTTCTATGTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTGAGACAGAGTCTCGCTCTGTCGCCAGGCTGGAGTGCAGTGGCAGGATCTCGGCTCACTGCAACCTCCCCCTCCTGGGTCCAAGTGATTCTCATGCCTCAGCCTCCCAAGTAGCTGAGACTACAGGCACATGCCACCACATGCAGCTAATTTTCGTATTTTTTTTTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGATGGTCTCGATCTCTTGACCTCGTGATCTGCCCGCCTTGGCCTTCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCTGGCCGATGTGTTCTGTTTGAAATCTTACTCAAAAGTATTTGAAGAGTTGTGTATAGTTGTATGGATATGTCTGTAGTAAACAGAAACAAATTGCTTCAGTTTCTCTTTACTTATTTTCTAG
Seq C2 exon
GTTACAGTACCTTTACCAGCATCGCAGCTTTCCTTGCCTAATTTTGGATCTACAGGGCAACCTCTAATTGCTTTGCCTCAGACTCTTCAGCCCCCATTACAGCATACCACTCCCCAAGCACAGGCTCAGAGTCTGAGTCGTCCTGCACAAGTAAGCCAGCCTTTCAGAGGATTAATTCCTGCTGGAACACAGCATAGCATGATTGCAACCACAGGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117523:ENST00000367742:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=NA C2=0.863
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains