HsaINT0020267 @ hg19
Intron Retention
Gene
ENSG00000165899 | C12orf64
Description
otogelin-like [Source:HGNC Symbol;Acc:26901]
Coordinates
chr12:80647246-80648350:+
Coord C1 exon
chr12:80647246-80647354
Coord A exon
chr12:80647355-80648303
Coord C2 exon
chr12:80648304-80648350
Length
949 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
ATTTTTATAATTTCTTTTAGTGT
3' ss Score
8.44
Exon sequences
Seq C1 exon
GCCTCGTAATGGACAATGGGACTTGCATCTCCTTGGAAAATTGCCCATGCGGTTTTCATGGATTAGCTTATTCAGTTGGTTCAAAAATTGAACAAGAATGTACTGAATG
Seq A exon
GTATGTGATCAGTGTGCAGCCAATTATTTCTGGGTACTTGGCTAGTTGACAACTTTACCATGACAGATGTTTAAAGGAATATACTCATTACTAATTTACTTCCCAAATTCCAACACAAAACTTGCATTTTATTTAAACTCCTTGGGGGAAGGGACATCTGTATTTCCTTTTATGATGTAATTCTTATCACTTACCTTGGTAATTCTATAACATCTTATATCCACATAATGAGTCTGTTGCATTTTCTTATCGTTTGTAATCACTAATTTGCACATACTGTTAGAACTTGATGGTGCTTCTGGGCTTCTCTGTTACATACTATAAAACATGCCTCTCCAGATCACCAATTTTTGGTCCATGATTAGAAACATTTAGAATTCCATATTAAATTTGCTAACTAACACTGTTGTCAAATATGAAATCCCTGCAGGACAGTCCTAAAAAGAAACAGAGGTCTAAATGTTGTCGGATACTTTTCCCTTTGGTGTCTGTGTATATAATTGAAATGTAATAGGATAACTAACCACATTCTCAGATGCTGATTCTGTTTCCGTTTTACAGGTACTCTGCTTTTGTCCTCTAAAACTCACACCTTTGTCAGGGTGGAAGGTAGAATTTATCTGACATAAGAGGAGATCTCTTCTCTCTTTTTAATACCTGTTGATCTTCATCATAGTCAGTGATTTTTACATATGACACACAAGAGATAATAATTTAGGTGCCAGCCAGCTCAAAATTACCAGTCAATTGAACTTATGCAGAGATGATTTTTTTATTATTATTTATTGATTTTATTTATTTTATTTTATTTTTTGCAGAGATTTTTTTAAGTCAGATTATTCTGAACCTATAAACATGATATATTTTGGTCCATTAATCAATACATTGATGCAAACATTAATACAGTTTCTCTATGCCAATAGATTAATATTTTTATAATTTCTTTTAG
Seq C2 exon
TGTGTGTGTTGGTGGAGTTTGGAACTGCACTGAGCAAGACTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899-C12orf64:NM_173591:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(25.9=37.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)