HsaINT0021660 @ hg19
Intron Retention
Gene
ENSG00000177025 | C19orf18
Description
chromosome 19 open reading frame 18 [Source:HGNC Symbol;Acc:28642]
Coordinates
chr19:58477898-58483872:-
Coord C1 exon
chr19:58483831-58483872
Coord A exon
chr19:58478001-58483830
Coord C2 exon
chr19:58477898-58478000
Length
5830 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TTTCTTTTCTTTCTTTTTAGCAA
3' ss Score
11.01
Exon sequences
Seq C1 exon
CTGCATCCCCTACGAACCCCATGAAATTCCTGAGGAATAAAG
Seq A exon
GTAAGCCAAGGGATCTGGGAGGGCGGGTGGACCCGCAACATTCCTGAAGCTGTCGTGATGTGTGGCTCCAGAGGGTGCTGGCTGGTCACCAAGGAGCCTGCACACGTGGTGCCTTCATGTGTGTTAGACAAGGTGCCCCCTCTGGAGGGGGATGCGCAGTGACACCGCTTGGGGCAGGTGAGAAGGTGGCTCAACTCCACGGGCTGATGTTGTAGTGAGTAGAGCACAGGCTGTGTCTGAGATCTCTTTGTGGAACACACAAAATGCATGGGCACACACAGCGGCCCTGTCAGCAGCCTTTCTAGCAACTCTCCCCACTGTGGCTTGTCCTGGAACCTCCTCAACACCTCTCGCTTCAGAGTCCTCCAAAGCAGAAGGCACCTTGTGTCCTGCTGCTGCTCCCGCCCCAGAGCATCCTTCCTTCTCCTCTGCACATTTGCTAAGTGCCTGCAACAGGGCGGCTTCTGAGTCAGCTCCCCCACCACCTACCCATCTCCACTGCTTTCACATGTAGCCAGCATTTTATTTAATCACATATGCTGAGTGAGACATGCAGACACAGAAATGACTGTCATGAAGGAAGAAGCCTGATACTCACGGGTCCCTAGAAGCAGGAGTCCACACAAGGAAGCACCAGGGTCTATCAGAAGGCAAAGGGAGCCAGGAAAGTGTGAGCAAAAGCCTTTATTCTGGGCCGGGTGCGGTGGCTCATCCCTGTAATCCCAGCACTTAGGAAGGCCGAGGTGGATGAATCACTTGAGGTCACGAGTTCGAGACCAGCTTGGCTAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGAGTGGTGGTGGGCACCTGTAATCCCAGCTATTTGGGAGGCTGAGGCGGGAGAATCGCATGAACCTGGGAGGTGGAGGTTGCAGTGAGCTGAGATTGGGTCGCTGCACTCTAGCCTGGGCAACAGAGCGAGGCTGTCTTTTTTAAAAAAAACAACTTTATTCTGGTTTTTACAGGAAGGCAGGTAGGGAAGGCGGGCTTGGGATCAGCTTGAGTGATTTGGTGGCTGTGGGGCATGGGGTATGTCCCTGGTTGTCTGGGACCTGGCCCTGGGGTGGTTGGGGGCAGGGGATGGTGGCCTGGAGCATGAGGGCTCCATAGAGATTGTTGGGGTGTAGGCTTTGGGTGTGTCGGCTTGCACATGAAAGGTGCACTTGCAGGCCAGGGTTTACTATCTTCAGGAATTGGCTGGACCTGGGAGGGCAGTCTCTTCAAGGGTCAGTTAAGGCCCCAAGATGTCAAAGTATCAGGAAATACAGAAAATAAAAAACGTGATGAATACATCCATCCACGCCAAACACATTATCAATCTTCCTAAAGCTCAGCTATGACTGTTTCACCTGCCCATTGACACCACCATCACCAAAGCACAGAGCTTGAGTCCTGGCTGGGGTATCAAAGGCCTGCACACTGGTCCTTCTTTTGACACTAGCTCGTTTTGTGTGCTGGTGCTAGAAGGTCACTGAGACCTCTGCCACCCCTGAGCTTCAGGTCCCAGTTGTAGGTAGGATAGAGACGGGACAAAATTGTTTATCTAATAAAGTTGATGGTCCGGGTGCAGTACAGGCTCATGCCTGTAATCCCAACACTTTGGGGGGCTGAGGTGGGTAGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGACAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGAGGCCAGCTACTCGGGAGGCTGAGGTAGGAGAACCCGGGAGGCTGAGGTTGAAGTGAGCAGAGATCGCACCACTGCACTCCAGCCTGGCAACAGAGCGAGACTCTGTAACAAAAAAAAAAAAATTATATGGAAAGATGTCTACCTTACTCATAGTAAGAATTGTGCATTGAAACTGCCAAGCTTAAATAATGAAGTTCGACAAATATGATTAAGTACAGAGTTTATTTGAGCACAAAGCTTGAGGATGTCCACCCACGAGACACTGACTCCAAACTAATGGGGACAGCATTTCCAAAGAGGAGAAGTTATGGTTTCACTTATATGTGCAGAGACTGACATTGTAGCAGGATTGTAACATTTTCCATATGAGACGAGTGCATAAGTTACAGCTATTTGATTGGTTATAGACGGCAACGTTCCAAGGAAGATTATTGCTCTGTGAGGAGGGGAAGCCATCTGAGGGGGCTCTCACAGCTGGCACCTCTTGATCTTCTTATTTACAGGAAAAAAGGCAGAAGTTGCCACTGCATCCTTGTGATTCAGGCTGCATAGCCACATTGCTCTCAGGTTCAGAGTAGTTCAAAGTTCCAACAGCTTTAAGTTTAAATTAGTTTAAGTTTGAATAATTTAATTTCATAAAACTACACTGTAATTCCAGTTTTCAGCTATCCTGTTGAAAGTGGGCAAAATGTCTCATAACTGTATTGGCAAAGGAGCTGGGAAACATAATCTCATGTCTTGTTTGTAGGCTAGCAGTGAGCACAACTTCTAGAGAGGGCAATTGACAGTTCTCATAAAAACAATGCTATTACTTTTTTTTTTTTTTTTTGAGATGGAGTTTCAATCTTGTATCTTGTCGCCCAGCCTGGAGTGTAATGATGCGATCTCAGCTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCATTACCATGCCCCGCTAATTTTGTGTTTTTAGCAGAGATGGGGTTTCACCATGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCCGGCTCGGCCTCCCAAAGTGCTGGGATTACAGACATGAGCCACCATGCCTGGCCAAGGTGCTTACTTTGTTTTTTTTCTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGTTTTTTTTTAAGACAGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAATGGCGCCATCGCGGCTCACTGCAACCTCCACCTCCTGGGCTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGCAGCTGGGATTGCAGGTGTGCACCACCACACCCGGCTAATTTTTGCATTTTTAGTGGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTTGTGATCCGCACACCTCGGCCTCCCAAAGTGCTGGGACTACAGGCATGAGCCACCGCAACCGGCTGGCAATTACTTTTTAACCTAGAGTGTTGAAATATACCTGGGGGATTTATTTTAATCAGTTATGGCAAGACTCCCAGACATGCAAATGATCTTCATGAAGGAAAAAGTTTATACTTATAGATTCCTGGAAACAGGAGACATGGCCCACCACACACGGGTACACCAGTAACCTCAGGAAGCACAGGGAGTGAGGGTGAGCAAGGTCCCCGCCTCTACTGGGGTTTCTGAGGGAAGGAATGGGTGAGGCATGGCAGGTACTCTGAGCAAATATAGATTTGAATAGTTTTGGTAAATCATAGGGATGGTTTCTAGTTGTCCAGTATTTGGCCCTGGGGTGATTTAGGGCAGGCAGGGAGAGATTGGCTTATTGTGTGAGTTTGAAAAGGAGATGGTTGGGGTGTGGGCTGTGGATTGGTTGGTTTGTATTTCAAAGATGTGCTTGTAGGGGAGTTATTCGCTGTCTCTAGGAAATAGCTAGCCCTGGGAAGGGAGGTCTCCAGGATTAAGGCCCCAAATGCCAGAGCATCAGGAATACGGAAAATAAGAAAATATAATAAATACACCCAGCAATTCCATTTCTAGTAAATTTTATTAAAAATATGCTATTCATTTTCCTAGTCTATTTCTCCCATCCTGCTTGGTGACTTTCTCATATATTTCTCTAGCTCTGTAAATATCTCAATGTATTCTACCCCAGCCTTGCTCTCCCAGAATGACCTTGTTTGCCTCCTTCACAAACAAAATACAAGCAGTTAAAAGACAGTATCCACACCCTCCTGTCTACCAGCAATCACACCTCCTTTCTCTGTCTCTTGCTGGAAATTGAACCGTCCATGCCAAGGCTGGCCTGTGTCCCAGCTTCCATCCTCTTAGGCCAACTCAAGGACTTTCCTGACAATTCCCTCTCCCTTTCCTGCATGCTCTGGTCTGAATGCTGGTGTCCCCCAACCCCATATTCAAGTATTGAAATCCTAACCCCAAAGGTGAGGATATTAGGAGTTGGGGCCTTTAGGAGGTGATGCGGTCTTGAGGGTGGAACCCCCATGACTGGGAATAGCACCCTTACAGTAGAAGTCACAGAGAGCTGTCTCACTCCTTCCACCCTGTGAGGACACAACAAAGAAGGCACCCTCTGTTGAACCAGAAAGTGAACCCTCGCCAGCCACCAAAGCTGCTGATGCCTTGATCTGGGACTTCCCAGCCTCCAGAACTGTGAGAAACCAATGTCTGTTGTTTCTTTGTTTCTTTTTCTTTTTCTTTTTTTGAGACAGGGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCACGATCTCGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCACCATGCCCAGCTAATTTTATTTTGTATTTTTATTAGAGATGGGGTTTCGCCGTGTTGGTCAGGCTGGTCTTGAACTCCTGACATCCTGATCCACCTGCCTTGCCTCCCAAAGTTTTTTTTTTTTAAGACAGGGTTTCATTCCCGTCACCCAGGCTGGAGTGTAATGGCGCAATCTCACCTCCCTACAACCTCCCACTCCCTGGCTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTGCCACCGCACCCGATGAATTTTTGTATTTTTGTAGAGTTGGGGTTTCACAATGTTGCCCAGGCTGGTCTTGAACTCCTGAGCTCACGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAAGAGTGGGCCACCACACCTGGCTGTGTCTGTTGTTTCTAAGCCACCAAACCTGTGGTGTTTTGTTACAGCAGCCAGAATGAACTGGCACCGTAGTATCACGATTCACTCTTTCATTCCCATTCACGAACATGCTGCCAGTGTTCACATGTTAAAAAACAAAATCCATCTCTCGATCCCTTAGACTCCTCCAGGAGCTGTGCCCATTTCTCTTCTTTCTTTTATACAAAGTTCCCCAAAATAATTTTCAAAATTCATGGTCTACAGTTACTTTCTTCTCACTCCCTCCTGAAACTGCTTCAGTTGTGTCCCCACCACACAGCTAATATGGCCTCTGCCCAGGTCTCTAGTGACCTCTTGGATGCCCAATCCCCAATGGTCTGTTTCAGTTTTCTTTCTTTTTTTTTTTTTTGAGACGGAGTTTCACACTGTTGCCCAGGCTGGAGTGCAGTGGCATGATCTCGGCTCACTGAAAATCTAACTTCAGTATTTTCTAAAATTAAGAGTCCTAGCCTGAGCAACGTGGCAAAATCCCATCTCTACAAAAACACAAAAAAATTAGGCAGGTGTGGTGGCGCATGCCTGTAGTGCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTCGGACCCGGGAGGCGAAAGTTGCGGTGAGCTGTGATCATGCACTGCACTCCAGCCTGGGTGATAGAGCGAGACTCAGTGTCAAAAAAGAAAACAAAACAAAAAAAAACAAAACAAGCTATTTTTGAAAGTGTTTCTGGTTTTGACTTCCATTCCCCTCTGTAAGGACAAATATATTAACTGAAAGACATAGCTAAAATGAACATTTTTGAGCACTTCTTTTCTTTTCTTTCTTTTTAG
Seq C2 exon
CAATAATTCGGCATAGACCTGCTCTTGTTAAAGTAATTTTAATTTCGAGCGTAGCCTTCAGCATTGCCCTGATATGTGGGATGGCAATCTCCTATATGATATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177025-C19orf18:NM_152474:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF097165=ETRAMP=FE(10.9=100),PF111393=DUF2910=FE(12.5=100)
A:
NA
C2:
PF097165=ETRAMP=FE(26.6=100),PF111393=DUF2910=FE(30.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)